Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scleropages_20formosus_20[refseq_20GCF_5F001624265.1_202016-04-20] 4,819 sequences; 777,359,276 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq4299 123 2e-23 seq4004 95.1 1e-14 >seq4299 Length=10599567 Score = 123 bits (136), Expect = 2e-23 Identities = 166/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 16705 TTACCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTC 16764 || |||||| | || | || |||| || || ||||||||||| || ||||||||||| Sbjct 10426338 TTGCCCTCCCCTGAGACGGAGCACCAGGTGAAGAGTGGACTCCTTCTGGATGTTGTAGTC 10426279 Query 16765 GGCCATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCAC 16824 || || ||| | | || |||| ||| ||||| ||| | || |||| ||| ||||| Sbjct 10426278 GGACAGGGTGCGGCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGG 10426219 Query 16825 AGGCACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTC 16884 ||| | ||| |||||||| |||| | ||||| | | | ||||||| ||| || Sbjct 10426218 AGGAATGCCTTCTTTGTCCTGGATTTTCGCTTTCACGTTCTCAATTGTGTCGCTGGGTTC 10426159 Query 16885 CGTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| ||||||||| || || || ||||| || ||||| |||||||| Sbjct 10426158 AACCTCCAGGGTGATGGTCTTGCCCGTGAGCGTCTTCACAAAGATCTGCAT 10426108 Score = 122 bits (134), Expect = 7e-23 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| || || ||||||||||| || ||||||||||||| || ||| | | || Sbjct 10426091 AGCACCAGGTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCT 10426032 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843 |||| ||| ||||| ||| | || |||| ||| ||||| ||| | ||| |||||||| Sbjct 10426031 TCCAGTTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGAATGCCTTCTTTGTCC 10425972 Query 16844 GCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTT 16903 |||| | ||||| | | | ||||||| ||| || |||| ||||||||| Sbjct 10425971 TGGATTTTCGCTTTCACGTTCTCAATTGTGTCGCTGGGTTCAACCTCCAGGGTGATGGTC 10425912 Query 16904 TTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || || || ||||| || ||||| |||||||| Sbjct 10425911 TTGCCCGTGAGCGTCTTCACAAAGATCTGCAT 10425880 >seq4004 Length=1791360 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||| || || | || || | || || || |||||||| || ||||||||||||| | Sbjct 83482 CCTCCACGAAGACGGAGGACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAC 83541 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | || |||| || ||||| || | || |||| ||| ||||| || Sbjct 83542 AGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCAGGGGGA 83601 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 | ||| || ||||| |||| ||| || | | | ||||| | ||||||| Sbjct 83602 ATGCCTTCCTTGTCCTGGATTTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCCACC 83661 Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| ||||||||| || |||||||| || || || || |||||||| Sbjct 83662 TCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 83708 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||| || || | || || | || || || |||||||| || ||||||||||||| | Sbjct 83710 CCTCCACGAAGACGGAGGACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAC 83769 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | || |||| || ||||| || | || |||| ||| ||||| || Sbjct 83770 AGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCAGGGGGA 83829 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 | ||| || ||||| |||| ||| || | | | ||||| | ||||||| Sbjct 83830 ATGCCTTCCTTGTCCTGGATTTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCCACC 83889 Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| ||||||||| || |||||||| || || || || |||||||| Sbjct 83890 TCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 83936 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||| || || | || || | || || || |||||||| || ||||||||||||| | Sbjct 83938 CCTCCACGAAGACGGAGGACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAC 83997 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | | || || || ||||| ||| | || |||| ||| ||||| || Sbjct 83998 AGGGTGCCGCCCATCTTCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGA 84057 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 | ||| || ||||| |||| ||| || | | | ||||| | ||||||| Sbjct 84058 ATGCCTTCCTTGTCCTGGATTTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCCACC 84117 Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTT 16938 || | ||||||||| || ||||| || || || ||||| |||||||| || Sbjct 84118 TCTAGGGTGATGGTCTTGCCGGTTAGGGTCTTCACAAAGATCTGCATCTT 84167 Score = 87.8 bits (96), Expect = 1e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 || || || |||||||| || ||||||||||||| || ||| | || |||| || Sbjct 83278 TGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCTTCCAGCTGC 83337 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAATTTGC 16852 ||||| || | || |||| ||| ||||| || | ||| || ||||| |||| Sbjct 83338 TTGCCAGCGAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTGTCCTGGATTTTG 83397 Query 16853 TGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGTC 16912 ||| || | | | ||||| | ||||||| || | ||||||||| || |||||| Sbjct 83398 GCCTTGACATTCTCAATGGTGTCACTGGGCTCCACCTCTAGGGTGATGGTCTTGCCGGTC 83457 Query 16913 AGCGTTTTGACAAAAATCTGCAT 16935 || || || || || |||||||| Sbjct 83458 AGGGTCTTCACGAAGATCTGCAT 83480 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405064208548810