Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scleropages_20formosus_20[refseq_20GCF_5F001624265.1_202016-04-20] 4,819 sequences; 777,359,276 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq3887 127 1e-24 seq4492 113 3e-20 seq3912 105 4e-18 seq4711 100 2e-16 seq4299 82.4 5e-11 >seq3887 Length=12445687 Score = 127 bits (140), Expect = 1e-24 Identities = 85/95 (89%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||| ||||| || |||||||| Sbjct 2009702 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGGTAGGGACAGTGGGAATCTCGT 2009643 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||| ||||||||||||||| Sbjct 2009642 TCATCCATTCATGCGCGTCCCTAATTAGATGACGA 2009608 >seq4492 Length=11537332 Score = 113 bits (124), Expect = 3e-20 Identities = 82/95 (86%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||| ||||||||||||||||||||||||| ||||| || ||||| | Sbjct 8583816 AAGCCCGTTCCCATGGCTGTGGTTTCGCTAGATAGTAGGTAGGGACAGTGGGAATCTTGG 8583875 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||| ||||||||||||||||||||| Sbjct 8583876 TTATCCATTCATGTGCGTCACTAATTAGATGACGA 8583910 >seq3912 Length=9171075 Score = 105 bits (116), Expect = 4e-18 Identities = 76/88 (86%), Gaps = 5/88 (6%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||| ||||| || |||||||| Sbjct 2688291 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGGTAGGGACAGTGGGAATCTCGT 2688232 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAG 25984 | |||| ||||||||| ||||| || || Sbjct 2688231 TCATCCATTCATGCGCATCACTGATGAG 2688204 >seq4711 Length=9196513 Score = 100 bits (110), Expect = 2e-16 Identities = 124/170 (73%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 6321 CCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAAAAACGAG 6380 || || || ||||| || || || || ||||||||||| ||||||||| ||| || || Sbjct 5502509 CCCACCAAGTATTTTGGCTGTGAGCTGGGCGCTCAGACCCAGTTTGATGCCAAGAATGAC 5502450 Query 6381 CGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGACGGCTTT 6440 |||| ||| || |||||||| || | | ||||||||| ||| | || || || || Sbjct 5502449 CGCTACATTGTCAACGGATCTCACGAGGCGAACAAGCTGCAAGACATGCTGGATGGATTC 5502390 Query 6441 ATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCGAGCT 6490 ||| | || ||||| ||||||| || || || || || || || || || Sbjct 5502389 ATTAGAAAATTTGTCCTGTGTCCTGAGTGTGAAAATCCTGAAACTGACCT 5502340 >seq4299 Length=10599567 Score = 82.4 bits (90), Expect = 5e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 || || || | ||| | ||||| ||||||||| |||||| || || ||||| || ||| Sbjct 10426106 CCCCCCCTGAGACGGAGCACCAGGTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAC 10426047 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | || | || || | ||| || || ||||| || || | || || || | || Sbjct 10426046 AGGGTGCGGCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGA 10425987 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | ||||||||||||| ||||| ||||| |||| | || || | |||||| Sbjct 10425986 ATGCCTTCTTTGTCCTGGATTTTCGCTTTCACGTTCTCAATTGTGTCGCTGGGTTCAACC 10425927 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 || | || || || || ||||| | || ||||| || ||||||||| Sbjct 10425926 TCCAGGGTGATGGTCTTGCCCGTGAGCGTCTTCACAAAGATCTGCATG 10425879 Score = 82.4 bits (90), Expect = 5e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 || || || | ||| | ||||| ||||||||| |||||| || || ||||| || ||| Sbjct 10426334 CCTCCCCTGAGACGGAGCACCAGGTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAC 10426275 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | || | || || | ||| || || ||||| || || | || || || | || Sbjct 10426274 AGGGTGCGGCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGA 10426215 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | ||||||||||||| ||||| ||||| |||| | || || | |||||| Sbjct 10426214 ATGCCTTCTTTGTCCTGGATTTTCGCTTTCACGTTCTCAATTGTGTCGCTGGGTTCAACC 10426155 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 || | || || || || ||||| | || ||||| || ||||||||| Sbjct 10426154 TCCAGGGTGATGGTCTTGCCCGTGAGCGTCTTCACAAAGATCTGCATG 10426107 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334927528027589