Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scleropages_20formosus_20[refseq_20GCF_5F001624265.1_202016-04-20] 4,819 sequences; 777,359,276 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq4299 114 1e-20 seq4004 102 7e-17 >seq4299 Length=10599567 Score = 114 bits (126), Expect = 1e-20 Identities = 144/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || || |||||||| ||| || || || |||||| ||||| || ||| Sbjct 10426076 GTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCCAGTTGCTTGCCA 10426017 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||| || | ||| ||||| |||||||||||||||||||| || || ||| Sbjct 10426016 GCAAAGATCAGCCTCTGCTGGTCAGGAGGAATGCCTTCTTTGTCCTGGATTTTCGCTTTC 10425957 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| |||||| ||| ||| || |||| ||| | || ||||| || || || Sbjct 10425956 ACGTTCTCAATTGTGTCGCTGGGTTCAACCTCCAGGGTGATGGTCTTGCCCGTGAGCGTC 10425897 Query 114366 TTTACAAAAATCTGCATG 114383 || ||||| ||||||||| Sbjct 10425896 TTCACAAAGATCTGCATG 10425879 Score = 114 bits (126), Expect = 1e-20 Identities = 144/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || || |||||||| ||| || || || |||||| ||||| || ||| Sbjct 10426304 GTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCCAGTTGCTTGCCA 10426245 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||| || | ||| ||||| |||||||||||||||||||| || || ||| Sbjct 10426244 GCAAAGATCAGCCTCTGCTGGTCAGGAGGAATGCCTTCTTTGTCCTGGATTTTCGCTTTC 10426185 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| |||||| ||| ||| || |||| ||| | || ||||| || || || Sbjct 10426184 ACGTTCTCAATTGTGTCGCTGGGTTCAACCTCCAGGGTGATGGTCTTGCCCGTGAGCGTC 10426125 Query 114366 TTTACAAAAATCTGCATG 114383 || ||||| ||||||||| Sbjct 10426124 TTCACAAAGATCTGCATG 10426107 >seq4004 Length=1791360 Score = 102 bits (112), Expect = 7e-17 Identities = 143/201 (71%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || || |||||||| ||| || || || |||||| || || || ||| Sbjct 83512 GTCGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCTTCCAGCTGCTTGCCA 83571 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| |||| || | ||| ||||| || ||||||||||| ||||| || || || Sbjct 83572 GCGAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTGTCCTGGATTTTGGCCTTG 83631 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| |||||| ||| || || |||| ||| | || ||||||||||| || Sbjct 83632 ACATTCTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTC 83691 Query 114366 TTTACAAAAATCTGCATGGCT 114386 || || || ||||||||| || Sbjct 83692 TTCACGAAGATCTGCATGCCT 83712 Score = 102 bits (112), Expect = 7e-17 Identities = 143/201 (71%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || || |||||||| ||| || || || |||||| || || || ||| Sbjct 83740 GTCGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCTTCCAGCTGCTTGCCA 83799 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| |||| || | ||| ||||| || ||||||||||| ||||| || || || Sbjct 83800 GCGAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTGTCCTGGATTTTGGCCTTG 83859 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| |||||| ||| || || |||| ||| | || ||||||||||| || Sbjct 83860 ACATTCTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTC 83919 Query 114366 TTTACAAAAATCTGCATGGCT 114386 || || || ||||||||| || Sbjct 83920 TTCACGAAGATCTGCATGCCT 83940 Score = 96.9 bits (106), Expect = 3e-15 Identities = 142/201 (71%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || || |||||||| ||| || || || |||||| || || || ||| Sbjct 83284 GTCGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCTTCCAGCTGCTTGCCA 83343 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| |||| || | ||| ||||| || ||||||||||| ||||| || || || Sbjct 83344 GCGAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTGTCCTGGATTTTGGCCTTG 83403 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| |||||| ||| || || || | ||| | || ||||||||||| || Sbjct 83404 ACATTCTCAATGGTGTCACTGGGCTCCACCTCTAGGGTGATGGTCTTGCCGGTCAGGGTC 83463 Query 114366 TTTACAAAAATCTGCATGGCT 114386 || || || ||||||||| || Sbjct 83464 TTCACGAAGATCTGCATGCCT 83484 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420109724850228