Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scleropages_20formosus_20[refseq_20GCF_5F001624265.1_202016-04-20] 4,819 sequences; 777,359,276 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq3898 114 2e-20 seq4702 93.3 8e-14 >seq3898 Length=2399012 Score = 114 bits (126), Expect = 2e-20 Identities = 116/151 (77%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 245003 ACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGC 245062 || |||| |||||||||||| |||||||| ||||| | ||| ||||||| | |||||| Sbjct 242597 ACTCTCTTCATGAAGAGGTCTGGGATCCACAGGGCATAGAACAGGTCCCGTGCCCTCTGT 242538 Query 245063 TCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGC 245122 || || || || |||||| ||||||||| ||||| |||| ||| | ||||||||| Sbjct 242537 TCCTCTTTCCCCGTATTCTTCTTCAGCTCCAGGAAGTCGAAGATGTCAAAATGCCAGGGC 242478 Query 245123 TCCATGTAGACAGCGAGGGCGCCGGGCCGCT 245153 |||| ||| | || | ||| || |||| || Sbjct 242477 TCCAGGTACATGGCAAAGGCTCCAGGCCTCT 242447 Score = 96.9 bits (106), Expect = 7e-15 Identities = 88/111 (79%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 244706 ACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGTG 244765 ||||| ||| | ||||||||| |||| ||| || || || || |||||||| |||||| Sbjct 243237 ACCTCATCCTTGCTGGTGTACTCCACAACCTCTGTACATAGATTGCTGCACTTAATGGTG 243178 Query 244766 CCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATG 244816 ||||||| ||| || ||| ||| |||||||| ||||||||||||||| Sbjct 243177 CCCAGGTTCTGCTGGTTGCTCTTCCGATTGCAGGCATCCTTGTAGAGCATG 243127 Score = 86.0 bits (94), Expect = 1e-11 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 244097 ACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGCTCGATG 244156 ||||||||||| || ||||| || ||||| ||||| ||||||| || ||||| ||| Sbjct 244363 ACCTGAAACTCGCCAGACAGTACACGGCGTGTGTAGATGTTGCTGGTGTAGGGCTCAATG 244304 Query 244157 CTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACCAGCAGA 244216 ||| | |||||||| ||||| || ||| || || ||||| || | | |||||| Sbjct 244303 GACTCGTTATTGCCCAGGATCTGGGCTGTGGAGGCCGTGGGCATAGGAGCAAGCAGCAGG 244244 Query 244217 CTGTTCCTCACGCCGTGCCT 244236 ||||| | ||| || || || Sbjct 244243 CTGTTGCGCACCCCATGTCT 244224 >seq4702 Length=3596321 Score = 93.3 bits (102), Expect = 8e-14 Identities = 100/130 (77%), Gaps = 2/130 (2%) Strand=Plus/Minus Query 42703 GGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCT 42762 || ||||||||||| | || || ||||| |||||||| || || |||| || | |||| Sbjct 2020055 GGTTGGTAGCCTTTGCTGCAGTGGAGGGAATCTTCTTTTCTGGGTCCTTTGCGGCAATCT 2019996 Query 42763 TCTGGCTCAAGCAGAAGGTGTC-GATGCCCGGACTCACCTTCTCGAACGAACTCATCAGC 42821 |||||| ||| || ||| ||| ||||| || ||||| | ||| || ||||| |||||| Sbjct 2019995 ACTGGCTGAAGAAG-AGGGGTCTCATGCCAGGGCTCACATACTCCAATGAACTGATCAGC 2019937 Query 42822 AGGGACGAGG 42831 || || |||| Sbjct 2019936 AGAGATGAGG 2019927 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944282315367440