Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scleropages_20formosus_20[refseq_20GCF_5F001624265.1_202016-04-20] 4,819 sequences; 777,359,276 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq3899 104 3e-17 seq3913 98.7 1e-15 seq4332 93.3 5e-14 seq4267 89.7 6e-13 seq4031 89.7 6e-13 seq3966 89.7 6e-13 seq3896 89.7 6e-13 seq4643 87.8 2e-12 seq4047 87.8 2e-12 seq4732 86.0 7e-12 >seq3899 Length=9633309 Score = 104 bits (114), Expect = 3e-17 Identities = 71/80 (89%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 56999 AAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACT 57058 |||||||||||| || | | |||||||||| ||||||||||||||||||||| ||||| Sbjct 5146306 AAAATTTTCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACT 5146247 Query 57059 CACCACTATACTACCGAGGA 57078 ||||||||||||| |||||| Sbjct 5146246 CACCACTATACTAACGAGGA 5146227 Score = 93.3 bits (102), Expect = 5e-14 Identities = 72/85 (85%), Gaps = 2/85 (2%) Strand=Plus/Minus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | |||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 5147208 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 5147149 Query 57066 ATACTACCGAGGATTGAATATATAA 57090 |||||| |||||| || |||||| Sbjct 5147148 ATACTAACGAGGA--CAACATATAA 5147126 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 6890377 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 6890436 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 6890437 TACTAACGAGGA 6890448 >seq3913 Length=1546322 Score = 98.7 bits (108), Expect = 1e-15 Identities = 76/90 (84%), Gaps = 3/90 (3%) Strand=Plus/Minus Query 56992 TTTATGAAAAATT---TTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGG 57048 |||| ||||||| |||||| || | | |||||||||| |||||||||||||||||| Sbjct 677176 TTTAGAAAAAATTGTTTTCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGG 677117 Query 57049 CGGACATACTCACCACTATACTACCGAGGA 57078 ||| |||||||||||||||||| |||||| Sbjct 677116 CGGGGATACTCACCACTATACTAACGAGGA 677087 Score = 98.7 bits (108), Expect = 1e-15 Identities = 74/87 (85%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 57004 TTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCA 57063 ||||||| || | | |||||||||| ||||||||||||||||||||| |||||||||| Sbjct 679379 TTTCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCA 679320 Query 57064 CTATACTACCGAGGATTGAATATATAA 57090 |||||||| |||||| |||||||| Sbjct 679319 CTATACTAACGAGGAGATGATATATAA 679293 Score = 93.3 bits (102), Expect = 5e-14 Identities = 71/83 (86%), Gaps = 2/83 (2%) Strand=Plus/Minus Query 56998 AAAAATTT--TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACAT 57055 |||| ||| ||||| || | | |||||||||| ||||||||||||||||||||| || Sbjct 679097 AAAACTTTCGTCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGAT 679038 Query 57056 ACTCACCACTATACTACCGAGGA 57078 |||||||||||||||| |||||| Sbjct 679037 ACTCACCACTATACTAACGAGGA 679015 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | |||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 235110 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 235169 Query 57066 ATACTACCGAGGA 57078 |||||| |||||| Sbjct 235170 ATACTAACGAGGA 235182 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | |||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 676870 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 676811 Query 57066 ATACTACCGAGGA 57078 |||||| |||||| Sbjct 676810 ATACTAACGAGGA 676798 >seq4332 Length=4495564 Score = 93.3 bits (102), Expect = 5e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 57005 TTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 57064 |||||| || | | |||||||||| ||||||||||||||||||||| ||||||||||| Sbjct 1853005 TTCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCAC 1852946 Query 57065 TATACTACCGAGGA 57078 ||||||| |||||| Sbjct 1852945 TATACTAACGAGGA 1852932 >seq4267 Length=1569155 Score = 89.7 bits (98), Expect = 6e-13 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 57005 TTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 57064 |||||| || | | |||||||||| ||||||||||||||||||||| ||||| ||||| Sbjct 965316 TTCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCAC 965375 Query 57065 TATACTACCGAGGA 57078 ||||||| |||||| Sbjct 965376 TATACTAACGAGGA 965389 >seq4031 Length=4291168 Score = 89.7 bits (98), Expect = 6e-13 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 57005 TTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 57064 |||||| || | | |||||||||| ||||||||||||||||||||| ||||| ||||| Sbjct 1865828 TTCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCAC 1865887 Query 57065 TATACTACCGAGGA 57078 ||||||| |||||| Sbjct 1865888 TATACTAACGAGGA 1865901 >seq3966 Length=9919444 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 1791100 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 1791041 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 1791040 TACTAACGAGGA 1791029 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||| ||| ||||||||||||||||||||| ||||||||||||| Sbjct 1790725 CTCCCCGTCGGGGAATCGACCCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 1790784 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 1790785 TACTAACGAGGA 1790796 >seq3896 Length=5725001 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 749367 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 749308 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 749307 TACTAACGAGGA 749296 >seq4643 Length=11069196 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | |||||||||| ||||||||||||||||||||| ||||| |||||| Sbjct 8106216 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACT 8106275 Query 57066 ATACTACCGAGGA 57078 |||||| |||||| Sbjct 8106276 ATACTAACGAGGA 8106288 >seq4047 Length=290122 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | |||||||||| ||||||||||||||||||||| |||||| ||||| Sbjct 125915 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCGCCACT 125974 Query 57066 ATACTACCGAGGA 57078 |||||| |||||| Sbjct 125975 ATACTAACGAGGA 125987 >seq4732 Length=5177925 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 4175882 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 4175941 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 4175942 TACTAACGAGGA 4175953 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543180078218960