Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scleropages_20formosus_20[refseq_20GCF_5F001624265.1_202016-04-20] 4,819 sequences; 777,359,276 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq4462 120 4e-22 seq3887 114 2e-20 seq4247 107 3e-18 seq4257 96.9 5e-15 >seq4462 Length=3044790 Score = 120 bits (132), Expect = 4e-22 Identities = 177/251 (71%), Gaps = 0/251 (0%) Strand=Plus/Plus Query 8926 CTGAATGGTTGCGGTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTT 8985 || || ||| || | ||||| ||||| ||| | | || || || || |||||||| Sbjct 2693827 CTTAAGGGTGGCAGAATTCACAATGTCAAAAGCGGTCTTGCCACCAAATGTACTGGGTTT 2693886 Query 8986 CCAGTACGCCGGGGAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCC 9045 ||||||| | |||||||| || ||| ||| ||||||||||| || || || || || Sbjct 2693887 CCAGTACTCTGGGGAGCATATAGGGTTTCCCAAGAGCCCTTTCAGAGAGAAAGGTGCACC 2693946 Query 9046 CAGCTCGATGATGCTCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCC 9105 || ||| | ||||| ||||| || |||||||| || || | || || | || | | Sbjct 2693947 CATCTCCACCATGCTTTCACCAAATATGGCACCTGGTCGTGTCTTCTCTAGCATTAGAGC 2694006 Query 9106 AGTGTAGAGTTCGACAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTC 9165 || |||| || | | || | ||||||||| || | |||| ||| || ||| |||| Sbjct 2694007 AGGATAGAACTCCATGCCATCAATGTCGCCATAAAGTTCCTCCAGCTCTGCTGCTGTCTC 2694066 Query 9166 CTTCTCACCTA 9176 ||| ||||||| Sbjct 2694067 CTTATCACCTA 2694077 >seq3887 Length=12445687 Score = 114 bits (126), Expect = 2e-20 Identities = 173/246 (70%), Gaps = 0/246 (0%) Strand=Plus/Minus Query 8933 GTTGCGGTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTAC 8992 ||||| | | | |||||||| || ||| | || || ||||||||||| ||||||||| Sbjct 11492645 GTTGCCGATCTGACGATGTCAAACCCTGTTTGACCACCAAAGGTGCTGGGCTTCCAGTAC 11492586 Query 8993 GCCGGGGAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCG 9052 | || ||||||||| ||| ||| |||||||||||||||||| || | ||| | ||| Sbjct 11492585 TCTGGAGAGCAGATGGGGTTTCCCAAGAGCCCTTTCAAGGAAAAAGGTGACCCGATCTCC 11492526 Query 9053 ATGATGCTCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAG 9112 | || |||| ||| || ||||| ||| |||| || || | | | ||| |||| Sbjct 11492525 ACCATACTCTGACCAAATATGGCGTTGGGGCGCGCCTTCTCAAGCAGCATTGCAGGGTAG 11492466 Query 9113 AGTTCGACAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCA 9172 | || | || || | || |||||||| | || ||||| ||| || | || ||| Sbjct 11492465 AACTCTAAGGCATCAATATCTCCATAGAGCTCCTCTAACTCCTGAGCCATAACTTTGTCA 11492406 Query 9173 CCTACA 9178 ||||| Sbjct 11492405 TCTACA 11492400 >seq4247 Length=11832447 Score = 107 bits (118), Expect = 3e-18 Identities = 126/168 (75%), Gaps = 2/168 (1%) Strand=Plus/Minus Query 9553 TCAGGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTCGGTTCTGG 9612 ||||||| ||| | ||||||| |||| || || |||||||| | || || ||||||||| Sbjct 296188 TCAGGCATCAGCGGATGCCAGTGGTACAGCGTGTTGAACTCAGATGCAATACGGTTCTGG 296129 Query 9613 TACTGAAAG-GCGGTACCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAGTGGTACCC 9671 ||||| ||| || | | ||| || | ||||||||| || | |||| ||||||||| || Sbjct 296128 TACTGGAAGCGCTG-GCTGAAAAGCAGCTCCGGGTCGAACTTCAGCTTGAAGTGGTAGCC 296070 Query 9672 GCTGAGTTGCTGGACATACTGTGTGATTATAATGTTAATGGTTTCCCC 9719 ||| || ||||| || || | || | ||| |||||||| || || Sbjct 296069 GCTCAGATGCTGCACGTAGTCCTCAATGACAATCTTAATGGTCTCACC 296022 Score = 104 bits (114), Expect = 3e-17 Identities = 165/237 (70%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 8942 TTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGGAG 9001 || || || || || || || | || || |||||||| || |||| || | || ||| Sbjct 297129 TTGACTATCTCAAAGCCCACTTTGCCCCCAAAGGTGCTCGGCATCCAATATTCTGGAGAG 297070 Query 9002 CAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGCTC 9061 || ||| ||| ||||||| ||||| | |||||| |||||||||| || | ||| | Sbjct 297069 CATATGGGGTTTCCCATGAGTCCTTTAAGGGAAAAAGGAGCCCCCATTTCAACCATGGTT 297010 Query 9062 TCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGACA 9121 || || || || ||| ||| | || || || || | || |||| ||| || || || Sbjct 297009 TCCCCAAAAATTGCATTGGGCCTTGGCTTCTCCACCAGGAGTCCAGGGTACAGCTCCACT 296950 Query 9122 GCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCTACA 9178 | || | || |||||| | |||| ||| || || ||||||||||| |||||| Sbjct 296949 GAGTCTATGTGGCCATACATCTTCTCCAGCTCTGCTGCCATCTCCTTCTCTCCTACA 296893 >seq4257 Length=10342467 Score = 96.9 bits (106), Expect = 5e-15 Identities = 154/221 (70%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 9736 GTGGTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTTTGAGAACATCGCAG 9795 ||||| || || | |||| ||| |||| | || || || || || || ||||| ||| Sbjct 3853208 GTGGTCTGGAAAATGCGCTCATCATCCCAGCCGGGATGCTCCTGCTTCAGCACATCACAG 3853149 Query 9796 ACCCTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAACCCGGCACTAAACCA 9855 || | ||||| || | |||||| || ||||| |||||||| | || || || | ||| Sbjct 3853148 ACTCGATTGTGCTCCCGCAGCCAGATTGTGGCATACATCATAAGTCCTGGGACCAGGCCA 3853089 Query 9856 AACACTTCATTCCCCACTGCAAAGCGCAGATCATCGGGCACTTCGGGCGCATACAGCATA 9915 || |||||| ||||||||||| || | || || || || | || | ||| |||| Sbjct 3853088 AAGGCTTCATGACCCACTGCAAAACGGTGCTCCTCAGGAACATGAGGAGGATAGTGCATC 3853029 Query 9916 TGCACCTGGGTCTCTTTGACGGTGGGGGGATACATTTCACC 9956 | ||| ||| || || || || || ||||| || || || Sbjct 3853028 TCCACTTGGACATCCTTTACTGTTGGAGGATAAATCTCCCC 3852988 Score = 96.9 bits (106), Expect = 5e-15 Identities = 197/289 (68%), Gaps = 4/289 (1%) Strand=Plus/Minus Query 9436 CCGGCAATCTGTCTAGTGAACGATTCAACTAATTGGGCTATTCCGTGCTTGATGAGGATG 9495 || |||||||| | |||| ||||| |||| | | || || || | | | |||| Sbjct 3853695 CCTGCAATCTGCTTGCTGAAGGATTCCACTAGGTTGTTGATGCCATGTTCTAACACGATG 3853636 Query 9496 GAATTGTTGTAAACGAAGTGTTCGTAACCATACTTCGCGTCGCCTATGCGAAAATCATCA 9555 || ||||| | | ||| || | ||| ||| | | | | ||| | || ||||| Sbjct 3853635 GAGTTGTTAAAGAGGAACTGCTGGTAGTTGTACACCTGGCCCTCGATGTGGAACTCATCT 3853576 Query 9556 GGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTCGGTTCTGGTAC 9615 |||| || | |||||| |||| || || ||||| || | | ||||||||||| ||| Sbjct 3853575 GGCATCAAGGGGTGCCAGTGGTAAAGAGTGTTGAATTCAGATGAGATTCGGTTCTGATAC 3853516 Query 9616 TGAAAG-GC-GGTACCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAGTGGTACCCGC 9673 || ||| || ||| ||| || ||||| |||||||| | |||| ||||||||| || | Sbjct 3853515 TGGAAGCGCTGGT--TGAAGAGCAACTCAGGGTCAAACTTAAGCTTGAAGTGGTAGCCAC 3853458 Query 9674 TGAGTTGCTGGACATACTGTGTGATTATAATGTTAATGGTTTCCCCGGT 9722 | || ||||| ||||| | || | ||| || ||||| || || || Sbjct 3853457 TCAGGTGCTGCACATAATCCTCAATCACAATCTTGATGGTCTCGCCTGT 3853409 Score = 91.5 bits (100), Expect = 2e-13 Identities = 110/150 (73%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 10387 TCACCTTTCACCCCGAGAGGAGTAGGGCAGTCACGAGGAACCGGAGGCAGAGTTCTCGTA 10446 |||||| || || | ||| || ||||| || || || ||||| || ||||| || Sbjct 3852122 TCACCTGCAACTCCCATAGGTGTTGGGCAATCCTTGGGCACTGGAGGAAGGGTTCTTGTG 3852063 Query 10447 TAATAGGATAGATTCGAAAATGCTTCCCAGCTATTGTAGCCATAATCTAAGTTGTAGAGC 10506 |||||||| || |||||| | ||||||||||| ||||| ||||||||| ||||| | Sbjct 3852062 TAATAGGAGAGGTTCGAATACGCTTCCCAGCTTTTGTAACCATAATCTGAGTTGAATGTA 3852003 Query 10507 GGGGGACTGTCAATCATCTCGGACCTGGCT 10536 || || || || |||| | || |||||| Sbjct 3852002 GGAGGGCTATCTATCAAATGAGATCTGGCT 3851973 Score = 87.8 bits (96), Expect = 3e-12 Identities = 190/282 (67%), Gaps = 2/282 (1%) Strand=Plus/Minus Query 8899 TCCCTTCACATTGGCACAAATGAGGGACTGAATGGTTGCGGTTTTCACGATGTCTAAACC 8958 |||||| |||||| ||||| || | | | ||| ||||| | || || || || Sbjct 3854554 TCCCTTAACATTGTTACAAACCAGCTTTTTCAGCGATGCTGTTTTGATAATTTCAAACCC 3854495 Query 8959 TACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGGAGCAGATGACGTTCGCCAT 9018 || | ||| ||||||||||| || ||||| ||| | || ||||| || | || |||| Sbjct 3854494 GACATTCCCACCGAAGGTGCTTGGCTTCCAATACTCTGGAGAGCATATAGCATTTCCCAT 3854435 Query 9019 GAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGCTCTCACCGAAGATGGCACC 9078 || ||||||| ||| | ||||| |||| || | ||| |||| || |||||||| Sbjct 3854434 CAGTCCTTTCAGTGAATAGGGAGCTCCCATTTCTACCATGGTCTCTCCAAAGATGGCGTT 3854375 Query 9079 GGGACGCGGTTTTTCGACGATGAAG-CCAGTGTAGAGTTCGACAGCCTCGACGTCGCCAT 9137 ||| | || || || || | |||| |||| || || || | || || | ||||| | Sbjct 3854374 GGGTCTTGGCTTCTCCAC-AAGAAGACCAGGATACAGCTCCATCGCATCAATATCGCCGT 3854316 Query 9138 AGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCTACAA 9179 | | | || | ||| | || |||| || || ||| ||| Sbjct 3854315 ATAATTCCTCTAGCTCCGATGCCATCTTTTTATCTCCTGCAA 3854274 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 723684404434600