Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scleropages_20formosus_20[refseq_20GCF_5F001624265.1_202016-04-20] 4,819 sequences; 777,359,276 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq3898 95.1 1e-14 seq3989 91.5 2e-13 seq4702 84.2 3e-11 >seq3898 Length=2399012 Score = 95.1 bits (104), Expect = 1e-14 Identities = 78/95 (82%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 115903 TAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 115962 ||||||||| | ||||| ||||||| | |||| || || |||| ||| |||||||||||| Sbjct 244330 TAGATGTTGCTGGTGTAGGGCTCAATGGACTCGTTATTGCCCAGGATCTGGGCTGTGGAG 244271 Query 115963 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTGCG 115997 || |||||||| || || | || ||||||||||| Sbjct 244270 GCCGTGGGCATAGGAGCAAGCAGCAGGCTGTTGCG 244236 Score = 87.8 bits (96), Expect = 2e-12 Identities = 111/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 116460 CTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCC 116519 ||||||||| |||||||| | || || ||||| | ||| | |||||||||||| Sbjct 243235 CTCATCCTTGCTGGTGTACTCCACAACCTCTGTACATAGATTGCTGCACTTAATGGTGCC 243176 Query 116520 CAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAGAGCATATATGGCGTCCC 116579 || ||||| || || ||| || || ||||||||||||||||| ||||| || || Sbjct 243175 CAGGTTCTGCTGGTTGCTCTTCCGATTGCAGGCATCCTTGTAGAGCATGTATGGTGTGCC 243116 Query 116580 CGTCTCCGTTTGGGACTTGAGAATAGCCTTCCA 116612 ||||| || || |||| || | ||| | ||| Sbjct 243115 AGTCTCTGTCTGAGACTCGATCACAGCATACCA 243083 >seq3989 Length=9007450 Score = 91.5 bits (100), Expect = 2e-13 Identities = 77/95 (81%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 127553 ATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCTTCAACCAGAAAATC 127612 ||||| ||||| ||||| ||||| ||||| || |||| ||| |||||||||||||| Sbjct 3293043 ATGAGCTCATTGGAGAATGTGAGACCAGGCATCAGGCCCCTCTTTTTCAACCAGAAAATT 3293102 Query 127613 GCACAAAATGAGCCAGAGAAGAAGATCCCCTCCAC 127647 ||| |||||| ||||||||||| || || ||||| Sbjct 3293103 GCAGCAAATGACCCAGAGAAGAAAATTCCTTCCAC 3293137 >seq4702 Length=3596321 Score = 84.2 bits (92), Expect = 3e-11 Identities = 84/109 (77%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 127539 CCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCT 127598 |||| || | | ||| |||||||| ||| | || |||||||||||||||| ||||| Sbjct 2019927 CCTCATCTCTGCTGATCAGTTCATTGGAGTATGTGAGCCCTGGCATGAGACCCCTCTTCT 2019986 Query 127599 TCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCAC 127647 ||| |||| | || || ||| || ||||| |||||||| |||||||| Sbjct 2019987 TCAGCCAGTAGATTGCCGCAAAGGACCCAGAAAAGAAGATTCCCTCCAC 2020035 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613470243860040