Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scleropages_20formosus_20[refseq_20GCF_5F001624265.1_202016-04-20] 4,819 sequences; 777,359,276 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq4299 138 1e-27 seq4004 134 2e-26 >seq4299 Length=10599567 Score = 138 bits (152), Expect = 1e-27 Identities = 171/234 (73%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 46360 TTATTTGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTA 46419 ||||| ||||| || | ||| | |||||| || | || |||||| ||||| ||||| Sbjct 10426341 TTATTGCCCTCCCCTGAGACGGAGCACCAGGTGAAGAGTGGACTCCTTCTGGATGTTGTA 10426282 Query 46420 GTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTC 46479 |||||| || ||||| | || || || |||||||| || || |||| | ||||||||| Sbjct 10426281 GTCGGACAGGGTGCGGCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTC 10426222 Query 46480 GGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGA 46539 | || | || || |||||| ||| ||| || | || | | |||||||| | Sbjct 10426221 AGGAGGAATGCCTTCTTTGTCCTGGATTTTCGCTTTCACGTTCTCAATTGTGTCGCTGGG 10426162 Query 46540 TTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||| || |||| |||||||| |||||||| ||||| || |||||||| ||||| Sbjct 10426161 TTCAACCTCCAGGGTGATGGTCTTGCCCGTGAGCGTCTTCACAAAGATCTGCAT 10426108 Score = 134 bits (148), Expect = 2e-26 Identities = 167/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| || || | ||| | |||||| || | || |||||| ||||| |||||||||| Sbjct 10426108 TGCCCCCCCTGAGACGGAGCACCAGGTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCGG 10426049 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | || ||||| | || || || |||||||| || || |||| | ||||||||| | | Sbjct 10426048 ACAGGGTGCGGCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAG 10425989 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | || || |||||| ||| ||| || | || | | |||||||| | ||| | Sbjct 10425988 GAATGCCTTCTTTGTCCTGGATTTTCGCTTTCACGTTCTCAATTGTGTCGCTGGGTTCAA 10425929 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | |||| |||||||| |||||||| ||||| || |||||||| ||||| Sbjct 10425928 CCTCCAGGGTGATGGTCTTGCCCGTGAGCGTCTTCACAAAGATCTGCAT 10425880 >seq4004 Length=1791360 Score = 134 bits (148), Expect = 2e-26 Identities = 145/192 (76%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||||||||| || |||||| | || || ||||||||||| ||||| Sbjct 83517 CTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCGAA 83576 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 |||| | ||||||||| | || | || ||||||||| ||| || ||||| | Sbjct 83577 GATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTGTCCTGGATTTTGGCCTTGACATT 83636 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | | ||||| || | ||||| |||| |||||||| ||||| ||||| || || || Sbjct 83637 CTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCAC 83696 Query 46582 AAAGATTTGCAT 46593 ||||| ||||| Sbjct 83697 GAAGATCTGCAT 83708 Score = 134 bits (148), Expect = 2e-26 Identities = 145/192 (76%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||||||||| || |||||| | || || ||||||||||| ||||| Sbjct 83745 CTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCGAA 83804 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 |||| | ||||||||| | || | || ||||||||| ||| || ||||| | Sbjct 83805 GATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTGTCCTGGATTTTGGCCTTGACATT 83864 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | | ||||| || | ||||| |||| |||||||| ||||| ||||| || || || Sbjct 83865 CTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCAC 83924 Query 46582 AAAGATTTGCAT 46593 ||||| ||||| Sbjct 83925 GAAGATCTGCAT 83936 Score = 131 bits (144), Expect = 2e-25 Identities = 144/192 (75%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||||||||| || |||||| | || || ||||||||||| ||||| Sbjct 83289 CTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCGAA 83348 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 |||| | ||||||||| | || | || ||||||||| ||| || ||||| | Sbjct 83349 GATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTGTCCTGGATTTTGGCCTTGACATT 83408 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | | ||||| || | ||||| || | |||||||| ||||| ||||| || || || Sbjct 83409 CTCAATGGTGTCACTGGGCTCCACCTCTAGGGTGATGGTCTTGCCGGTCAGGGTCTTCAC 83468 Query 46582 AAAGATTTGCAT 46593 ||||| ||||| Sbjct 83469 GAAGATCTGCAT 83480 Score = 122 bits (134), Expect = 1e-22 Identities = 151/203 (74%), Gaps = 3/203 (1%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGC-GCTCGTCGTCGAGCTGCTTGCCGGCGA 46460 |||||| ||||| ||||||||||| || |||| || | || || ||||||||||| || | Sbjct 83973 CTCCTTCTGGATGTTGTAGTCGGACAGGGTGCCGCCCATCTTC-AGCTGCTTGCCAGCAA 84031 Query 46461 ATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCG 46520 | |||| | ||||||||| | || | || ||||||||| ||| || ||||| Sbjct 84032 AGATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTGTCCTGGATTTTGGCCTTGACAT 84091 Query 46521 TCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580 || | | ||||| || | ||||| || | |||||||| ||||| || || || || | Sbjct 84092 TCTCAATGGTGTCACTGGGCTCCACCTCTAGGGTGATGGTCTTGCCGGTTAGGGTCTTCA 84151 Query 46581 CAAAGATTTGCATTTTGCACAAA 46603 ||||||| ||||| || |||||| Sbjct 84152 CAAAGATCTGCATCTT-CACAAA 84173 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565204351451880