Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scleropages_20formosus_20[refseq_20GCF_5F001624265.1_202016-04-20] 4,819 sequences; 777,359,276 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq3913 262 3e-64 seq4299 125 5e-23 seq4012 109 4e-18 >seq3913 Length=1546322 Score = 262 bits (290), Expect = 3e-64 Identities = 941/1458 (65%), Gaps = 14/1458 (1%) Strand=Plus/Plus Query 517259 GCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACC 517318 |||| ||||| || || ||||| ||||| | || || || ||||| ||||| ||||| Sbjct 688469 GCAGAAACATTCAGGATCCCATTTGCATCAATGTCGAAGGTCACTTCGATTTGGGGGACT 688528 Query 517319 CCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTA 517378 |||| | | ||||| ||||| || | | ||| | ||||| || || || || Sbjct 688529 CCTCGCGGGGCAGGAGGGATGCCAGTGAGTTCAAACTTGCCCAGCAAGTTGTTGTCCTTG 688588 Query 517379 GTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAA 517438 || | || ||| || || | | ||||| ||| | | || || ||||| || Sbjct 688589 GTCATGGCTCTTTCGCCTTCATATACCTGGATCAAGACTCCTGGCTGGTTGTCTGAGTAC 688648 Query 517439 GTTGTAAATACTCTGGATTT-TTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGT 517497 || || ||| ||||| ||| ||| || || || ||||| | | || | | || Sbjct 688649 GTAGTGAATG-TCTGGGTTTGTTTGGTGGGGATGGTGGTGTTGCGTTTGATGAGAGGAGT 688707 Query 517498 CATAATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAAT 517557 ||| | ||||||||||| || | ||| ||||| ||||| | ||||| | || | | Sbjct 688708 CATGACTCCACCTGCTGTCTCAATACCCAGAGACAGAGGTGCCACATCCAGCAGCAGCAG 688767 Query 517558 ATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATA 517617 | || | || ||| || | ||| | || || ||||| || | ||| || ||||| Sbjct 688768 GTCCTGGATGTTCTCAGAGGTGTCACCCATGAGGATGGCTGCCTGTACAGCTGCCCCATA 688827 Query 517618 TGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTTGA 517677 ||| || |||||||| ||||| | | | || || | | || ||||| |||| Sbjct 688828 TGCCACCGCTTCATCTGGATTGATGCTCTTGTTCAGCTCCCTGCCGTTGAAGAAATCCTG 688887 Query 517678 AAGAAGTTGTCT-TACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCA 517736 || || | ||| | |||||| || || | || |||||||| | || || || || | Sbjct 688888 CAGCAGCT-TCTGGATCTTAGGGATTCGGGTGGAGCCTCCAACCAGCACGATATCGTGGA 688946 Query 517737 CCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCCGCTC 517796 ||| || || |||| ||| | ||| | |||| || || || || || ||| Sbjct 688947 TCTGCGACTTGTCCATTTTGGCATCTCTCAGGGCTTTCTCCACTGGGTCCAGGGTTCCTC 689006 Query 517797 TAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACAT-TATAA-TC 517854 | || | ||| ||| |||||||| || || || || || || | || || || Sbjct 689007 TGAAAAGGTCCGAATTCAGTTCTTCAAAGCGTGCCCTTGT--GATGGATGTGTAGAAGTC 689064 Query 517855 AATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACG 517914 ||| ||||| ||| ||| |||| |||||| | | || | || || || | | Sbjct 689065 AATGCCTTCATACAGAGAGTCAATTTCAATGCTGGCCTGCGAGCTCGAGGACAGGGTTCT 689124 Query 517915 TTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGG--CTTTTGCTGATTGATTCAAA 517972 || || ||||| ||||| || | || || | | | || ||| | ||| | | Sbjct 689125 CTTGGCCCGTTCGCATGCCGTACGCAGCCTCCTCAGCGCCCTCTTGTT--TTGGCTGATG 689182 Query 517973 TCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAA 518032 || | || |||| |||||||| || || ||| | | || | ||||| ||||| Sbjct 689183 TCCTTCTTGCATTTCCTCTTGAACTCCTCCACAAAGTGATTGACCATGCGATTGTCAAAG 689242 Query 518033 TCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCA 518092 || || || |||| | ||| | |||| ||| || | || | ||| | ||||| ||| Sbjct 689243 TCCTCCCCACCCAGGTGAGTGTCCCCTGCCGTGGCCTTCACCTCGAAGATGCCATCCTCA 689302 Query 518093 AGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATT 518152 | | || | | |||||| ||| ||||| |||| || || || | ||||| Sbjct 689303 ATGGTCAGGATGGACACATCAAAGGTACCACCCCCCAAGTCGAAGATCAAGACATTGCGC 689362 Query 518153 TCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATA 518212 || | | | || || |||||||| |||| |||||| || || |||||||| || Sbjct 689363 TCACCCTTCTTGCCCTTGTCGAGACCATAAGCAATAGCAGCTGCTGTGGGTTCATTGATG 689422 Query 518213 ATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAA 518272 || || | ||||| || |||||||| ||| |||||||||||||| || | || || Sbjct 689423 ATCCTGAGCACATTCAGCCCAGCAATCACTCCAGCATCTTTAGTGGCCTGGCGCTGCGAG 689482 Query 518273 TCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTA-CTTCTTTACCAATATAAGC 518331 || || || || || || || || || || |||| | | ||||| | || | || || Sbjct 689483 TCATTGAAGTAGGCGGGCACCGTGATGACTGCATTGGACACCTTCTGT-CCCAGGTACGC 689541 Query 518332 GCTTGCCGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGGGAATATTG 518391 || | | |||||||| | | ||| || || |||| ||| ||| || || Sbjct 689542 CTCAGCAATCTCCTTCATTTTTACCAGCACCATGGAGGAGATTTCTTCCGGGTAAAATGC 689601 Query 518392 CTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTATTACCAACATTAATAACTTT 518451 |||| || || || ||| | || | ||||| ||| || | || || || Sbjct 689602 TTTGGTCTCTCCTTTGTACTCTACCTGAACTTTGGGTTTTCCTCCATCACTGATCACCTT 689661 Query 518452 AAATGGCCAGTATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTAA 518511 || ||||||| ||||| || || || || |||| | ||| | || || || | Sbjct 689662 GAAGGGCCAGTGCTTCATGTCAGACTGCACCACGGGGTCCTCAAACTTCCTGCCGATCAG 689721 Query 518512 TCGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGCATC 518571 || || ||||||||||| || ||| | || || || || | || | ||||| ||||| Sbjct 689722 CCGCTTGGCATCAAAAATGGTGTTGTTGGGGTTCATGGCCACCTGGTTCTTGGCAGCATC 689781 Query 518572 TCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTG 518631 |||||| || ||||| ||||| || | || || ||||||||| | ||| || || Sbjct 689782 TCCAATGAGCCTCTCTGTGTCTGTGAAGGCCACGTAACTTGGAGTTGTTCTATTGCCCTG 689841 Query 518632 ATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGT 518691 ||||| || || ||||| || || |||| || | || || ||||| | || || Sbjct 689842 GTCATTAGCGATGATTTCCACCTTTCCATGCTGAAACACCCCCACACAGGAGTAGGTGGT 689901 Query 518692 TCCTAAATCAATACCAAT 518709 || | |||||| ||||| Sbjct 689902 GCCCAGATCAATGCCAAT 689919 >seq4299 Length=10599567 Score = 125 bits (138), Expect = 5e-23 Identities = 113/142 (80%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 518165 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 518224 || || || || ||||| |||| ||||||||| ||||| ||||| || |||| || |||| Sbjct 6915869 TTCTTGTCCAGGCCATAGGCAATAGCAGCAGCTGTTGGCTCATTGATGATTCGCAGAACA 6915928 Query 518225 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 518284 || | || | |||| |||||||||||||||| || || | ||| |||||||| || ||| Sbjct 6915929 TTCAAGCCCGAAATTGTTCCTGCATCTTTAGTAGCCTGACGTTGAGAATCGTTGAAGTAT 6915988 Query 518285 GCAGGAACAGTAATAACGGCAT 518306 || || |||||||| || |||| Sbjct 6915989 GCTGGCACAGTAATTACAGCAT 6916010 Score = 109 bits (120), Expect = 4e-18 Identities = 140/193 (73%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 518520 CATCAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGCATCTCCAATCA 518579 || |||| | || || ||||| || |||||| | |||| ||| |||||||| ||||||| Sbjct 6916737 CACCAAACACTGTGTTAGTTGGGTTCATTGCAACCTGATTTTTTGCTGCATCCCCAATCA 6916796 Query 518580 GATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCG 518639 | |||||| || || |||| |||||| || || || | || || || ||||| | Sbjct 6916797 AACGTTCTGAATCAGTGAATGCAACATAGCTGGGTGTGGTCCTGTTGCCCTGGTCATTGG 6916856 Query 518640 CAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAAT 518699 |||| || || ||||| |||| ||| | ||||| ||||| | || || || | || Sbjct 6916857 CAATGATCTCCACTTTGCCATGTTGGAAAACACCCACACAGGAGTAGGTGGTCCCCAGAT 6916916 Query 518700 CAATACCAATAGC 518712 ||||||||| ||| Sbjct 6916917 CAATACCAACAGC 6916929 Score = 104 bits (114), Expect = 2e-16 Identities = 108/142 (76%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 518165 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 518224 |||||||| | || || |||| ||||||||||||||||||||||| |||| | ||| Sbjct 6936277 TTTTTATCCAAGCCGTATGCAATGGCAGCAGCAGTTGGTTCATTAATTATTCGTAGTACA 6936218 Query 518225 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 518284 || || |||| |||| | || ||||| || |||||||| | || || || || || || Sbjct 6936217 TTTAGCCCAGAAATTGTACCAGCATCCTTGGTGGCTTGGCGCTGGGAGTCATTGAAGTAG 6936158 Query 518285 GCAGGAACAGTAATAACGGCAT 518306 || || || || ||||| |||| Sbjct 6936157 GCTGGTACTGTTATAACAGCAT 6936136 Score = 98.7 bits (108), Expect = 8e-15 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 518523 CAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGCATCTCCAATCAGAT 518582 |||| | || || ||||| || |||||| | |||| ||| |||||||| || |||| | Sbjct 6935587 CAAACACCGTGTTAGTTGGGTTCATTGCAACCTGATTTTTTGCTGCATCCCCGATCAAAC 6935528 Query 518583 GTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAA 518642 |||| | || || |||| |||||| || || || | || || || ||||| |||| Sbjct 6935527 GTTCACTATCCGTGAATGCAACATAGCTGGGTGTGGTCCTGTTGCCCTGGTCATTGGCAA 6935468 Query 518643 TAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATCAA 518702 | || || ||||| |||| ||| | ||||| ||||| | || || || | ||||| Sbjct 6935467 TGATCTCCACTTTGCCATGTTGGAAAACACCCACACAGGAGTAGGTGGTCCCCAGATCAA 6935408 Query 518703 TACCAATAGCAATTTTATCTGACATTATT 518731 |||||| ||| | | ||||||| || Sbjct 6935407 TACCAACTGCAGCTCCCTTTGACATTGTT 6935379 Score = 96.9 bits (106), Expect = 3e-14 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 322241 AAACCGTATGCAAGAGCTGCTGCAGTTGGTTCATTAATTATTTTAAGAACATCTAAACCC 322300 || |||||||||| || || ||||||||||||||||||||| || |||| || || Sbjct 6936268 AAGCCGTATGCAATGGCAGCAGCAGTTGGTTCATTAATTATTCGTAGTACATTTAGCCCA 6936209 Query 322301 GCAATTTTAGCAGAATCAAGAGTTGCTTGTCTCTGTGCGTCATTAAAATATGCTGGTACA 322360 | |||| || ||| ||| || ||||| | ||| | |||||| || || |||||||| Sbjct 6936208 GAAATTGTACCAGCATCCTTGGTGGCTTGGCGCTGGGAGTCATTGAAGTAGGCTGGTACT 6936149 Query 322361 GTAATAACTGCTTTATTAATAGG 322383 || ||||| || || ||| ||| Sbjct 6936148 GTTATAACAGCATTTGTAACAGG 6936126 >seq4012 Length=935771 Score = 109 bits (120), Expect = 4e-18 Identities = 113/148 (76%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 518165 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 518224 || ||||| || ||||| |||| ||| || ||||| |||||||| || || | |||||| Sbjct 173542 TTCTTATCCAGGCCATATGCAATAGCTGCTGCAGTAGGTTCATTGATGATACGTAAAACA 173483 Query 518225 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 518284 ||||| |||| ||| |||| ||||| || |||||||||| || || || || || || Sbjct 173482 TTAAGCCCAGAAATCGTTCCAGCATCCTTGGTGGCTTGTCGCTGAGAGTCATTGAAGTAG 173423 Query 518285 GCAGGAACAGTAATAACGGCATCAGTTA 518312 ||||| || ||||| || || | |||| Sbjct 173422 GCAGGTACCGTAATGACAGCGTTTGTTA 173395 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780583265346214