Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scleropages_20formosus_20[refseq_20GCF_5F001624265.1_202016-04-20] 4,819 sequences; 777,359,276 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq3913 141 7e-28 seq4012 122 7e-22 seq4299 120 2e-21 >seq3913 Length=1546322 Score = 141 bits (156), Expect = 7e-28 Identities = 376/570 (66%), Gaps = 17/570 (3%) Strand=Plus/Minus Query 549977 ATGTCAAACAAAG---TAGCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGT 550033 |||||| ||||| || | || || || ||| | || ||||| || ||||| || Sbjct 689940 ATGTCAGCCAAAGGCCTATCAATTGGCATTGATCTGGGCACCACCTACTCCTGTGTGGGG 689881 Query 550034 GTTTGGCAAAATGGTAAAGTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCA 550093 || | || |||| || || ||||| || || ||||| || || || ||||| |||||| Sbjct 689880 GTGTTTCAGCATGGAAAGGTGGAAATCATCGCTAATGACCAGGGCAATAGAACAACTCCA 689821 Query 550094 TCTTATGTTTCTTTCACGGAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAG-- 550151 ||| || | ||||| || || || | |||| ||||| || || | || | Sbjct 689820 AGTTACGTGGCCTTCACAGACACAGAGAGGCTCATTGGAGATGCTGCCAAGAACCAGGTG 689761 Query 550152 -CCACTGGTAATCCTACCAATACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTT 550210 ||| || || || | ||| || ||||||||||| || || | || || || | ||| Sbjct 689760 GCCA-TG--AACCCCAACAACACCATTTTTGATGCCAAGCGGCTGATCGGCAGGAAGTTT 689704 Query 550211 AATGATTCGACTGTTCAGGCAGATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCT 550270 | || | || ||| | || |||||||| ||||| ||| | | | | || | Sbjct 689703 GAGGACCCCGTGGTGCAGTCTGACATGAAGCACTGGCCCTTCAAGGTGATCAGTGATGGA 689644 Query 550271 GGAAAACCTTATATTGAAGC----TACTCATGAAGGATCTGTTAAACAATTTTCACCAGA 550326 |||||||| | || | | ||| | || || | ||| ||||| || || Sbjct 689643 GGAAAACCCAAAGTTCAGGTAGAGTACAAAGGAGAGACC----AAAGCATTTTACCCGGA 689588 Query 550327 ACAAATTTCATCTATGGTTTTAATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCA 550386 | |||| || || ||||| | | |||||||| | | || || | | || || Sbjct 689587 AGAAATCTCCTCCATGGTGCTGGTAAAAATGAAGGAGATTGCTGAGGCGTACCTGGGACA 689528 Query 550387 AGAAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGC 550446 | || | ||||||| || || || || || || || |||||||| || || || || Sbjct 689527 GAAGGTGTCCAATGCAGTCATCACGGTGCCCGCCTACTTCAATGACTCGCAGCGCCAGGC 689468 Query 550447 TACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTAC 550506 ||||||||||||||| |||||||| || ||||| || | || ||||||||||| || Sbjct 689467 CACTAAAGATGCTGGAGTGATTGCTGGGCTGAATGTGCTCAGGATCATCAATGAACCCAC 689408 Query 550507 TGCTGCTGCACTTGCATATGGACTTGATAA 550536 || ||||| |||| ||||| || || || Sbjct 689407 AGCAGCTGCTATTGCTTATGGTCTCGACAA 689378 >seq4012 Length=935771 Score = 122 bits (134), Expect = 7e-22 Identities = 109/137 (80%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 550400 GCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCT 550459 || || || || ||||| || || || |||||||| || || ||||| || || |||||| Sbjct 173403 GCTGTCATTACGGTACCTGCCTACTTCAATGACTCTCAGCGACAAGCCACCAAGGATGCT 173462 Query 550460 GGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTT 550519 ||| ||| |||| ||||||||| | ||||| ||||||||||||||||| || || || Sbjct 173463 GGAACGATTTCTGGGCTTAATGTTTTACGTATCATCAATGAACCTACTGCAGCAGCTATT 173522 Query 550520 GCATATGGACTTGATAA 550536 |||||||| || ||||| Sbjct 173523 GCATATGGCCTGGATAA 173539 >seq4299 Length=10599567 Score = 120 bits (132), Expect = 2e-21 Identities = 114/146 (78%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 550391 GTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACT 550450 ||||| |||| ||||| ||||| |||||||| || || || || |||||||| |||||| Sbjct 6916017 GTTACCAATGCTGTAATTACTGTGCCAGCATACTTCAACGATTCTCAACGTCAGGCTACT 6915958 Query 550451 AAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCT 550510 |||||||| ||| ||| | || | |||||||| || || |||||||| || || ||| Sbjct 6915957 AAAGATGCAGGAACAATTTCGGGCTTGAATGTTCTGCGAATCATCAATGAGCCAACAGCT 6915898 Query 550511 GCTGCACTTGCATATGGACTTGATAA 550536 ||||| |||| ||||| || || || Sbjct 6915897 GCTGCTATTGCCTATGGCCTGGACAA 6915872 Score = 116 bits (128), Expect = 3e-20 Identities = 114/147 (78%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 550391 GTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACT 550450 ||||| |||| || ||||| |||||||| || || |||||||| || || ||||| || Sbjct 6936129 GTTACAAATGCTGTTATAACAGTACCAGCCTACTTCAATGACTCCCAGCGCCAAGCCACC 6936188 Query 550451 AAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCT 550510 || |||||||| ||| |||| || ||||| || || || || |||||||| |||||| Sbjct 6936189 AAGGATGCTGGTACAATTTCTGGGCTAAATGTACTACGAATAATTAATGAACCAACTGCT 6936248 Query 550511 GCTGCACTTGCATATGGACTTGATAAA 550537 ||||| ||||||| || | |||||| Sbjct 6936249 GCTGCCATTGCATACGGCTTGGATAAA 6936275 Score = 111 bits (122), Expect = 1e-18 Identities = 129/174 (74%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 549976 AATGTCAAACAAAGTAGCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGT 550035 ||||||||| || || | ||||| ||| | || ||||| || ||||| ||||| Sbjct 6935382 AATGTCAAAGGGAGCTGCAGTTGGTATTGATCTGGGGACCACCTACTCCTGTGTGGGTGT 6935441 Query 550036 TTGGCAAAATGGTAAAGTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATC 550095 || ||| |||| ||||| || || ||||||||||| || || ||||| || || || Sbjct 6935442 TTTCCAACATGGCAAAGTGGAGATCATTGCCAATGACCAGGGCAACAGGACCACACCCAG 6935501 Query 550096 TTATGTTTCTTTCACGGAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCA 550149 |||||| | |||||||| | ||||| ||| | || |||||||||||| |||| Sbjct 6935502 CTATGTTGCATTCACGGATAGTGAACGTTTGATCGGGGATGCAGCAAAAAATCA 6935555 Score = 107 bits (118), Expect = 2e-17 Identities = 119/159 (75%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 549991 AGCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAA 550050 |||| | ||||| ||| | || ||||| || ||||| ||||||| ||| |||| || Sbjct 6916930 AGCTGTTGGTATTGATCTGGGGACCACCTACTCCTGTGTGGGTGTTTTCCAACATGGCAA 6916871 Query 550051 AGTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCAC 550110 ||| || || ||||||||||| || || ||||| || || || |||||| | ||||| Sbjct 6916870 AGTGGAGATCATTGCCAATGACCAGGGCAACAGGACCACACCCAGCTATGTTGCATTCAC 6916811 Query 550111 GGAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCA 550149 || | |||| ||| |||| |||||||||||| |||| Sbjct 6916810 TGATTCAGAACGTTTGATTGGGGATGCAGCAAAAAATCA 6916772 Score = 93.3 bits (102), Expect = 3e-13 Identities = 120/164 (73%), Gaps = 4/164 (2%) Strand=Plus/Minus Query 563253 CCTGAGACGGAGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGA 563310 |||||||||||| || || ||||| || ||| | ||| || ||||| || | || Sbjct 10426101 CCTGAGACGGAGCACCAGGTGAAGAGTGGACTCCTTCTGG--ATGTTGTAGTCGGACAGG 10426044 Query 563311 GTTCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATT 563370 || | |||||| ||||| || || ||||| || || || ||||| ||||||||||| Sbjct 10426043 GTGCGGCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGAATG 10425984 Query 563371 CCTTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATC 563414 |||||||| || || ||||| ||| || ||||||||| || Sbjct 10425983 CCTTCTTTGTCCTGGATTTTCGCTTTCACGTTCTCAATTGTGTC 10425940 Score = 93.3 bits (102), Expect = 3e-13 Identities = 120/164 (73%), Gaps = 4/164 (2%) Strand=Plus/Minus Query 563253 CCTGAGACGGAGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGA 563310 |||||||||||| || || ||||| || ||| | ||| || ||||| || | || Sbjct 10426329 CCTGAGACGGAGCACCAGGTGAAGAGTGGACTCCTTCTGG--ATGTTGTAGTCGGACAGG 10426272 Query 563311 GTTCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATT 563370 || | |||||| ||||| || || ||||| || || || ||||| ||||||||||| Sbjct 10426271 GTGCGGCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGAATG 10426212 Query 563371 CCTTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATC 563414 |||||||| || || ||||| ||| || ||||||||| || Sbjct 10426211 CCTTCTTTGTCCTGGATTTTCGCTTTCACGTTCTCAATTGTGTC 10426168 Score = 86.0 bits (94), Expect = 5e-11 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 552507 GGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGCC 552566 || ||||| |||||||| |||||||| || || ||||| || || || || || |||||| Sbjct 6909845 GGCATTCCACCTGCTCCCCGTGGAGTGCCCCAGATTGAGGTGACCTTTGACATTGATGCC 6909786 Query 552567 AATGGAATTTTGAATGTGACTGCTTGTGATAA 552598 ||||| ||| |||||||| ||||| ||| || Sbjct 6909785 AATGGCATTATGAATGTGTCTGCTGTTGACAA 6909754 Score = 86.0 bits (94), Expect = 5e-11 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 552507 GGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGCC 552566 || ||||| |||||||| |||||||| || || ||||| || || || || || |||||| Sbjct 6937723 GGCATTCCACCTGCTCCCCGTGGAGTGCCCCAGATTGAGGTGACCTTTGACATTGATGCC 6937782 Query 552567 AATGGAATTTTGAATGTGACTGCTTGTGATAA 552598 |||||||| || |||||| ||||| ||| || Sbjct 6937783 AATGGAATCTTAAATGTGTCTGCTGTTGACAA 6937814 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029041149546310