Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scleropages_20formosus_20[refseq_20GCF_5F001624265.1_202016-04-20] 4,819 sequences; 777,359,276 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq4343 158 1e-33 seq4462 86.0 5e-12 >seq4343 Length=2653754 Score = 158 bits (174), Expect = 1e-33 Identities = 134/165 (81%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 29869 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 29928 ||||| | | ||| || |||||||| ||||| || | ||||||||||||||| |||||| Sbjct 516818 AGCCCTGCAATGTGGGCAATCATGTAGGTGAGCAGGGCGTAGCTGGCGATGTTGAAGGGT 516877 Query 29929 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 29988 || ||||| |||||||| |||||| |||||| ||||| || || ||||| ||||||||| Sbjct 516878 ACGCCGAGGCCCATGTCTGCCGACCGCTGGTACAGCTGGCAGGACAGCTCCCCGTCGCTC 516937 Query 29989 ACGTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCCATGAGG 30033 ||||| ||||| |||| | |||||| || || | |||||| ||| Sbjct 516938 ACGTAGAACTGGCACAGAGCGTGGCAGGGGGGCAAAGCCATCAGG 516982 Score = 132 bits (146), Expect = 4e-26 Identities = 138/180 (77%), Gaps = 1/180 (1%) Strand=Plus/Plus Query 30150 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30209 |||||| |||| |||||||| || || | ||||||||| ||||| || || |||||||| Sbjct 518034 CATGTCTTTGTATTCTGCTCCAAAGTGGCGCCACTGGAAACCGTAGACAGGCCCCAGGTC 518093 Query 30210 TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 30269 ||||| || ||| | ||| || ||||||||| || || | || || ||||| || Sbjct 518094 ACCCTCCTCTCTGGACGTGAACCCATTCTTGTCCAGGAATTCACGAGACCCATTGGCATC 518153 Query 30270 CCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCA 30329 ||||||||| || |||||||| || ||||| |||| || ||||| || ||| |||| || Sbjct 518154 CCAGATCTTGACGCCCTTCTCAGAAAGCTCCTTGGCATTGGTGGAGCC-CTGCCGAAGCA 518212 >seq4462 Length=3044790 Score = 86.0 bits (94), Expect = 5e-12 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 112110 CCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGGATGGAGAA 112169 ||||||||| || | ||| |||||||| ||| ||||| ||| || || |||||||| Sbjct 429069 CCTGCTGAGCACAATGTTGATCCTGTCGGGCAGGGGTCTGTTCGACTCTGGAATGGAGAA 429010 Query 112170 CCAAGTCTTTCTACCCATTATCACCACGTTCT 112201 ||| ||||||| |||||| |||||||| |||| Sbjct 429009 CCACGTCTTTCGACCCATGATCACCACATTCT 428978 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408593601249887