Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scleropages_20formosus_20[refseq_20GCF_5F001624265.1_202016-04-20] 4,819 sequences; 777,359,276 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq3943 228 2e-54 seq4492 192 1e-43 seq4247 118 2e-21 seq4020 118 2e-21 seq3989 107 4e-18 seq3917 104 4e-17 seq3898 98.7 2e-15 seq4702 89.7 1e-12 >seq3943 Length=4718742 Score = 228 bits (252), Expect = 2e-54 Identities = 194/239 (81%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 241389 GCTGACAGCCTTGGCACATGTGCCACAGGACCTCCTGTTTGAGTTGGGCCACCTGGTCCC 241448 |||||||||| || || ||| || ||| | ||||||||| || |||||||| || | Sbjct 1371326 GCTGACAGCCGCTGCTCACGTGTGTCATGACTTTCTGTTTGAGCTGAGCCACCTGCTCGC 1371385 Query 241449 GCAGAACGGACGCGGTATTGGACAGTCCTGCGTTGTCAGACTTGAGCACCTTCACTTTCT 241508 |||| || |||||||| | || || || || ||||| |||||||||||||||||||| | Sbjct 1371386 GCAGCACCGACGCGGTGCTCGAAAGACCCGCATTGTCCGACTTGAGCACCTTCACTTTGT 1371445 Query 241509 CCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCTGCCAAGCGGT 241568 |||| || ||||||||||| ||||| |||||||| || || |||||||| |||| ||||| Sbjct 1371446 CCTCGAGGCGCGCGATGCGCTCCAGCTTGCGCCGCCGACACTTGGTGGCCGCCAGGCGGT 1371505 Query 241569 TCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCGATCGGAGAC 241627 ||| | ||||| || |||||||||||||| ||||| |||||||||||||| || ||| Sbjct 1371506 TCCTCTGCCTCTTGCGCTCCGCCTTGATGCGCTCCTGATCCTCCATGTCGATGGGCGAC 1371564 Score = 93.3 bits (102), Expect = 8e-14 Identities = 89/115 (77%), Gaps = 8/115 (7%) Strand=Plus/Plus Query 238926 TCTGTTTGAGTTGGGCCACCCGGTCCCGCAGAACGGACGCGGTATTGGACAGACCCGCGT 238985 |||||||||| || |||||| | || ||||| || |||||||| | || |||||||| | Sbjct 1371359 TCTGTTTGAGCTGAGCCACCTGCTCGCGCAGCACCGACGCGGTGCTCGAAAGACCCGCAT 1371418 Query 238986 TATCAGACTTGAGCA--------TTCTCCTCCAGCCGCGCGATGCGTTCCAGCTT 239032 | || |||||||||| || ||||| || ||||||||||| |||||||| Sbjct 1371419 TGTCCGACTTGAGCACCTTCACTTTGTCCTCGAGGCGCGCGATGCGCTCCAGCTT 1371473 >seq4492 Length=11537332 Score = 192 bits (212), Expect = 1e-43 Identities = 189/244 (77%), Gaps = 0/244 (0%) Strand=Plus/Minus Query 241389 GCTGACAGCCTTGGCACATGTGCCACAGGACCTCCTGTTTGAGTTGGGCCACCTGGTCCC 241448 |||||||||| || || ||| || || | |||||| || || ||||| || |||| Sbjct 9908091 GCTGACAGCCGCTGCTCACGTGTGTCATCACTTTCTGTTTCAGCTGCGCCACTTGTTCCC 9908032 Query 241449 GCAGAACGGACGCGGTATTGGACAGTCCTGCGTTGTCAGACTTGAGCACCTTCACTTTCT 241508 |||| ||||| ||||| | ||||| || || ||||| || || || ||||| |||| Sbjct 9908031 GCAGCACGGAGGCGGTGCTCGACAGGCCCGCATTGTCCGATTTCAGGCTTTTCACCTTCT 9907972 Query 241509 CCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCTGCCAAGCGGT 241568 ||||||| || | |||||| |||||||||||||| | ||| ||||| || |||| |||| Sbjct 9907971 CCTCCAGGCGGGAGATGCGCTCCAGTTTGCGCCGCCTGCACTTGGTCGCCGCCAGCCGGT 9907912 Query 241569 TCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCGATCGGAGACT 241628 ||| ||| ||||| || ||||| ||||| || |||||| ||||||||||||||| ||| Sbjct 9907911 TCCTGAGCCTCTTGCGCTCCGCTTTGATCCGCTCCTGGCTCTCCATGTCGATCGGGGACA 9907852 Query 241629 TGGG 241632 |||| Sbjct 9907851 TGGG 9907848 >seq4247 Length=11832447 Score = 118 bits (130), Expect = 2e-21 Identities = 154/212 (73%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 241418 ACCTCCTGTTTGAGTTGGGCCACCTGGTCCCGCAGAACGGACGCGGTATTGGAC---AGT 241474 |||| ||| ||||| ||||||||||| || ||||| | | || || |||| || Sbjct 6715501 ACCTTCTGCTTGAGCTGGGCCACCTGCTCGCGCAGCATGTTGGCCGT---GGACGCGAGC 6715557 Query 241475 CCTGCGTTGTCAGACTTGAGCACCTTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGT 241534 | | ||| | ||||||||| ||||||||| |||||||||| | ||| | ||||| Sbjct 6715558 TCCGAGTTCTGGGACTTGAGCGTCTTCACTTTATCCTCCAGCCTGGAGATCCTCTCCAGC 6715617 Query 241535 TTGCGCCGGCGGCATTTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTG 241594 || | | |||||| |||| ||| |||| | ||||| | | ||| | || |||||| Sbjct 6715618 TTCCTCTTGCGGCACTTGGAGGCGGCCACCCTGTTCCTCATGCGCTTCCTCTCGGCCTTG 6715677 Query 241595 ATGCGTTCCTGGTCCTCCATGTCGATCGGAGA 241626 ||||| |||||| |||||||||||| || || Sbjct 6715678 ATGCGCTCCTGGGTCTCCATGTCGATGGGCGA 6715709 >seq4020 Length=2648434 Score = 118 bits (130), Expect = 2e-21 Identities = 172/243 (71%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 241385 AGCTGCTGACAGCCTTGGCACATGTGCCACAGGACCTCCTGTTTGAGTTGGGCCACCTGG 241444 ||| |||||||||| | || ||| || ||||| ||| || || || |||||||| Sbjct 1508184 AGCAGCTGACAGCCGCTGTTCACGTGGTTCATGACCTTCTGCTTCAGCTGCGCCACCTGC 1508243 Query 241445 TCCCGCAGAACGGACGCGGTATTGGACAGTCCTGCGTTGTCAGACTTGAGCACCTTCACT 241504 ||||||| | | || || || | ||| ||| | | ||| ||| ||| ||| Sbjct 1508244 TCCCGCAATAAGCTGGCCGTGGAGGCTAAGTCTGTGTTCTGCGTCTTCAGCGTCTTTACT 1508303 Query 241505 TTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCTGCCAAG 241564 || ||||| |||| || ||||| ||||| || | | |||||| |||| |||||| | | Sbjct 1508304 TTGTCCTCGAGCCTCGAAATGCGCTCCAGCTTCCTCTTGCGGCACTTGGAGGCTGCGATG 1508363 Query 241565 CGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCGATCGGA 241624 ||||| ||||| |||| | || ||||||||||| ||||| ||||||| ||| || Sbjct 1508364 CGGTTGCGGAGCTTCTTCCTCTCGGCCTTGATGCGCTCCTGCGTGTCCATGTTGATGGGC 1508423 Query 241625 GAC 241627 ||| Sbjct 1508424 GAC 1508426 >seq3989 Length=9007450 Score = 107 bits (118), Expect = 4e-18 Identities = 95/119 (80%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 48155 TCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGACCCCCCTCTGTTTG 48214 || |||| ||| |||||| | |||||||| |||||||||||| | ||||||| ||| Sbjct 3293031 TCATCCCTGCTAATGAGCTCATTGGAGAATGTGAGACCAGGCATCAGGCCCCTCTTTTTC 3293090 Query 48215 AGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCACTGCCGCGAACGC 48273 | |||||||||||| || || || ||||||||||| || || |||||||| || || || Sbjct 3293091 AACCAGAAAATTGCAGCAAATGACCCAGAGAAGAAAATTCCTTCCACTGCAGCAAAGGC 3293149 >seq3917 Length=2356098 Score = 104 bits (114), Expect = 4e-17 Identities = 169/242 (70%), Gaps = 6/242 (2%) Strand=Plus/Minus Query 241389 GCTGACAGCCTTGGCACATGTGCCACAGGACCTCCTGTTTGAGTTGGGCCACCTGGTCCC 241448 |||||||||| | || ||| || |||| ||| ||||| || |||||||| || | Sbjct 1928544 GCTGACAGCCGCTGTTCACGTGGTTCATCACCTTCTGCTTGAGCTGCGCCACCTGCTCGC 1928485 Query 241449 GCAGAACGGACGCGGTATTGGAC---AGTCCTGCGTTGTCAGACTTGAGCACCTTCACTT 241505 |||| | | || || |||| || | | ||| | |||||||| |||||| | Sbjct 1928484 GCAGCATGTTGGCCGT---GGACGCGAGCTCCGAGTTCTGCGACTTGAGGTTCTTCACCT 1928428 Query 241506 TCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCTGCCAAGC 241565 | |||||||||| || ||| | ||||| || | | |||||| |||| || || | | Sbjct 1928427 TGTCCTCCAGCCTCGAGATCCTCTCCAGCTTCCTCTTGCGGCACTTGGAAGCGGCGATCC 1928368 Query 241566 GGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCGATCGGAG 241625 ||||| | | ||| | || ||||||||||| |||||| |||||||||||| || | Sbjct 1928367 TGTTCCTCATGCGCTTCCTCTCGGCCTTGATGCGCTCCTGGCTCTCCATGTCGATGGGGG 1928308 Query 241626 AC 241627 || Sbjct 1928307 AC 1928306 >seq3898 Length=2399012 Score = 98.7 bits (108), Expect = 2e-15 Identities = 116/154 (75%), Gaps = 6/154 (4%) Strand=Plus/Minus Query 213813 ACTCTCTGCATGAACAGGTCCGGGACCCACAGCGCGGTGAACAGGTCCCTGGTCCTCCTC 213872 ||||||| |||||| ||||| |||| |||||| || ||||||||||| || | |||| Sbjct 242597 ACTCTCTTCATGAAGAGGTCTGGGATCCACAGGGCATAGAACAGGTCCC--GTGC-CCTC 242541 Query 213873 TCGTCCACT---CCAGAGTTTTTGCGCAGATCTAGAAAGTCAAAGATGTCCGCGTGCCAC 213929 | ||| || || | || || ||| || || ||||| |||||||| ||||| Sbjct 242540 TGTTCCTCTTTCCCCGTATTCTTCTTCAGCTCCAGGAAGTCGAAGATGTCAAAATGCCAG 242481 Query 213930 GGCTCCATGTAGATGGCAAAGGCGCCCGGCCTCT 213963 ||||||| ||| ||||||||||| || ||||||| Sbjct 242480 GGCTCCAGGTACATGGCAAAGGCTCCAGGCCTCT 242447 Score = 86.0 bits (94), Expect = 1e-11 Identities = 95/124 (77%), Gaps = 2/124 (2%) Strand=Plus/Minus Query 213528 GTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGG 213587 |||||||||| | ||| || || || |||||||| ||||||||||||||||| ||| Sbjct 243222 GTGTACTCCACAACCTCTGTACATAGATTGCTGCACTTAATGGTGCCCAGGTTCTGCTGG 243163 Query 213588 TTTGACTTTGCGTTGGCAGA-ATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTG 213646 || ||| || | |||| |||||||||||||||||| || | || |||||| ||| Sbjct 243162 TTGCTCTTC-CGATTGCAGGCATCCTTGTAGAGCATGTATGGTGTGCCAGTCTCTGTCTG 243104 Query 213647 GGAC 213650 ||| Sbjct 243103 AGAC 243100 >seq4702 Length=3596321 Score = 89.7 bits (98), Expect = 1e-12 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 48155 TCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGACCCCCCTCTGTTTG 48214 || || | |||||| || | |||||| | ||| || ||||||| ||||||| || Sbjct 2019929 TCATCTCTGCTGATCAGTTCATTGGAGTATGTGAGCCCTGGCATGAGACCCCTCTTCTTC 2019988 Query 48215 AGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCACTGCCGCGAACGC 48273 |||||| | |||||||| || || ||||| |||||||| ||||||||||| || || || Sbjct 2019989 AGCCAGTAGATTGCCGCAAAGGACCCAGAAAAGAAGATTCCCTCCACTGCAGCAAAGGC 2020047 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931476686792960