Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scleropages_20formosus_20[refseq_20GCF_5F001624265.1_202016-04-20] 4,819 sequences; 777,359,276 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq3913 203 2e-46 seq4299 131 1e-24 seq4012 118 7e-21 seq4425 93.3 3e-13 >seq3913 Length=1546322 Score = 203 bits (224), Expect = 2e-46 Identities = 374/546 (68%), Gaps = 2/546 (0%) Strand=Plus/Minus Query 474330 CAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAAG 474389 ||||||| |||||| | || || || ||| ||||| | || | || |||| || | Sbjct 689921 CAATTGGCATTGATCTGGGCACCACCTACTCCTGTGTGGGGGTGTTTCAGCATGGAAAGG 689862 Query 474390 TAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACTG 474449 | ||||| || || |||||||| || ||||||||||| ||| || || | || || | Sbjct 689861 TGGAAATCATCGCTAATGACCAGGGCAATAGAACAACTCCAAGTTACGTGGCCTTCACAG 689802 Query 474450 AAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAATA 474509 | || || || |||||||||||||| || | || | || || || || | Sbjct 689801 ACACAGAGAGGCTCATTGGAGATGCTGCCAAGAACCAGGTGGCCATGAACCCCAACAACA 689742 Query 474510 CTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCTG 474569 | ||||||||||| || | |||| || | || ||||| || || || || |||| Sbjct 689741 CCATTTTTGATGCCAAGCGGCTGATCGGCAGGAAGTTTGAGGACCCCGTGGTGCAGTCTG 689682 Query 474570 ATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATATAGAAGCAA 474629 | ||| || ||||| || |||||||| | || ||| || ||||| | | | | | Sbjct 689681 ACATGAAGCACTGGCCCTTCAAGGTGATCAGTGATGGAGGAAAACCCAAAGTTCAGGTAG 689622 Query 474630 TACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTAGCCA 474689 || ||| || || ||| ||||| |||||| |||| || || ||||| | | | Sbjct 689621 AGTACAAAGGAGAGACCAAAGCATTTTACCCGGAAGAAATCTCCTCCATGGTGCTGGTAA 689562 Query 474690 AAATGAAACAAACCGC-GAGCTCATATCTTGGACAAGAAGTAACTGATGCAGTAATTACT 474748 ||||||| | | || ||| | || || ||||| | || | ||||||| || || Sbjct 689561 AAATGAAGGAGATTGCTGAGG-CGTACCTGGGACAGAAGGTGTCCAATGCAGTCATCACG 689503 Query 474749 GTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTGCA 474808 || || || || || ||||| || || || || || ||||||||||| ||| ||||| Sbjct 689502 GTGCCCGCCTACTTCAATGACTCGCAGCGCCAGGCCACTAAAGATGCTGGAGTGATTGCT 689443 Query 474809 GGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGTCTT 474868 || || ||||| | | || || |||||||| |||||||| || ||||||||||||| Sbjct 689442 GGGCTGAATGTGCTCAGGATCATCAATGAACCCACAGCAGCTGCTATTGCTTATGGTCTC 689383 Query 474869 GATAAG 474874 || ||| Sbjct 689382 GACAAG 689377 >seq4299 Length=10599567 Score = 131 bits (144), Expect = 1e-24 Identities = 114/142 (80%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 474735 ATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATG 474794 |||| ||||||||||| |||||||| || || |||||||||||||| || |||||||||| Sbjct 6916010 ATGCTGTAATTACTGTGCCAGCATACTTCAACGATTCTCAACGTCAGGCTACTAAAGATG 6915951 Query 474795 CGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCAC 474854 | |||| |||| | || | |||||| | || || || ||||| |||||||| || || Sbjct 6915950 CAGGAACAATTTCGGGCTTGAATGTTCTGCGAATCATCAATGAGCCAACAGCTGCTGCTA 6915891 Query 474855 TTGCTTATGGTCTTGATAAGAA 474876 |||| ||||| || || ||||| Sbjct 6915890 TTGCCTATGGCCTGGACAAGAA 6915869 Score = 105 bits (116), Expect = 4e-17 Identities = 120/161 (75%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 474333 TTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAAGTAG 474392 ||||||||||| | || || || ||| ||||| | ||||| ||| |||| ||||| | Sbjct 6916925 TTGGTATTGATCTGGGGACCACCTACTCCTGTGTGGGTGTTTTCCAACATGGCAAAGTGG 6916866 Query 474393 AAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACTGAAA 474452 | || |||||||||||||| || || || || ||||| |||||| | || ||||| Sbjct 6916865 AGATCATTGCCAATGACCAGGGCAACAGGACCACACCCAGCTATGTTGCATTCACTGATT 6916806 Query 474453 CTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCA 474493 | |||| | | ||||| ||||| || ||| |||| | |||| Sbjct 6916805 CAGAACGTTTGATTGGGGATGCAGCAAAAAATCAGGTTGCA 6916765 Score = 105 bits (116), Expect = 4e-17 Identities = 123/166 (74%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 474328 TGCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAA 474387 |||| ||||||||||| | || || || ||| ||||| | ||||| ||| |||| || Sbjct 6935397 TGCAGTTGGTATTGATCTGGGGACCACCTACTCCTGTGTGGGTGTTTTCCAACATGGCAA 6935456 Query 474388 AGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTAC 474447 ||| || || |||||||||||||| || || || || ||||| |||||| | || || Sbjct 6935457 AGTGGAGATCATTGCCAATGACCAGGGCAACAGGACCACACCCAGCTATGTTGCATTCAC 6935516 Query 474448 TGAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCA 474493 || | ||||| | | || || ||||| || ||| |||| | |||| Sbjct 6935517 GGATAGTGAACGTTTGATCGGGGATGCAGCAAAAAATCAGGTTGCA 6935562 Score = 89.7 bits (98), Expect = 3e-12 Identities = 105/142 (74%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 474735 ATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATG 474794 |||| || || || || ||||| || || ||||| || || || ||||| || || |||| Sbjct 6936136 ATGCTGTTATAACAGTACCAGCCTACTTCAATGACTCCCAGCGCCAAGCCACCAAGGATG 6936195 Query 474795 CGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCAC 474854 | || | |||| | || || ||||| |||| || |||||||||||||| || || || Sbjct 6936196 CTGGTACAATTTCTGGGCTAAATGTACTACGAATAATTAATGAACCAACTGCTGCTGCCA 6936255 Query 474855 TTGCTTATGGTCTTGATAAGAA 474876 |||| || || | ||||| || Sbjct 6936256 TTGCATACGGCTTGGATAAAAA 6936277 >seq4012 Length=935771 Score = 118 bits (130), Expect = 7e-21 Identities = 115/148 (78%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 474729 TAACTGATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTA 474788 |||| | || || ||||| || || || || || ||||| ||||| || ||||| || | Sbjct 173395 TAACAAACGCTGTCATTACGGTACCTGCCTACTTCAATGACTCTCAGCGACAAGCCACCA 173454 Query 474789 AAGATGCGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAG 474848 | ||||| |||| ||| | || ||||||||||||||||| || |||||||| || |||| Sbjct 173455 AGGATGCTGGAACGATTTCTGGGCTTAATGTTTTACGTATCATCAATGAACCTACTGCAG 173514 Query 474849 CCGCACTTGCTTATGGTCTTGATAAGAA 474876 | || |||| ||||| || |||||||| Sbjct 173515 CAGCTATTGCATATGGCCTGGATAAGAA 173542 >seq4425 Length=11942861 Score = 93.3 bits (102), Expect = 3e-13 Identities = 155/220 (70%), Gaps = 7/220 (3%) Strand=Plus/Minus Query 474389 GTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTAC- 474447 || ||||| |||||||||||||| ||||| | | || ||||| ||||| |||| || Sbjct 7185388 GTGGAAATCATTGCCAATGACCAGGGTAACCGTATCACTCCATCCTATGTGGCTTTCACC 7185329 Query 474448 --TGAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTG-CATCTAATCCTGT 474504 ||| ||||| ||| ||||| |||||||| || ||| || || | || || |||| Sbjct 7185328 ATTGAGGGTGAACGTCTCATTGGGGATGCTGCAAAGAATC-AGTTGACCTCCAACCCTGA 7185270 Query 474505 TAATACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCA 474564 || ||| | |||||||| || || || ||||| |||| | |||| || |||| || Sbjct 7185269 GAACACTGTGTTTGATGCCAAGAGGTTAATTGGCCGTACGTGGAATGACCCCTCTGTGCA 7185210 Query 474565 ATCTGATATGCGTCATTGGCCTTTTAAGG--TGATAAATG 474602 ||||| || |||||| |||| |||| |||| Sbjct 7185209 GCAGGATATCAAGTATCTGCCTTTCAAGGTATGATTAATG 7185170 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3267972489708212