Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scleropages_20formosus_20[refseq_20GCF_5F001624265.1_202016-04-20] 4,819 sequences; 777,359,276 total letters Query= NC_020474.2 Length=180421 Score E Sequences producing significant alignments: (Bits) Value seq4054 95.1 1e-14 seq3797 95.1 1e-14 >seq4054 Length=608398 Score = 95.1 bits (104), Expect = 1e-14 Identities = 223/337 (66%), Gaps = 0/337 (0%) Strand=Plus/Minus Query 160632 TTCGTCTTGAGCGGAAAGTCGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGCTC 160691 || || |||| ||||||||||| || || ||| | || ||||||||| | || Sbjct 600883 TTTGTTTTGATAGGAAAGTCGGTTCCACAGGTGTTCAGCAGGTACTTCCACTGAACGGGA 600824 Query 160692 AGGTCGTGCAGGTCCCTCATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTAC 160751 | ||| |||| |||||| || | || ||||| || | |||||| |||||| Sbjct 600823 GATTTCAGCAAGTCCTCCATGCAGTTTAGGTCAGCCTGTACCCTTGACCAGGATGCGTAC 600764 Query 160752 ACTACGTTCTCTAGTTTACTGGCCACAAAGACGTTATCGAAACACGACACGATTCCCACC 160811 || || || || ||| | || |||||||| || || || || ||||| || || | Sbjct 600763 ACCACATTTTCCAGTCTGCTTGCCACAAACACATTGGGAAAGCAGGACACAATGGCCCTC 600704 Query 160812 ACCGCCAGAAAGAACATCTTATCCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGA 160871 || || ||| || | | ||| | ||||| || || || |||| || || Sbjct 600703 ACAGCATTCTTGAAGTCCTCAGATGATTTTTGATCCACATGAACACAGTACACATTGTGT 600644 Query 160872 GGCGCGTAGATGGCCCTGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATA 160931 ||| | || | || | |||| |||||||||||| || || || | |||||||| || Sbjct 600643 GGCACATAAACAGCACGCAGCAGCCTCTCGAACATTTCAATTTTCTCGTGGATCACCATG 600584 Query 160932 GAGTAGGCTATCGGAAACTCGGTCTCCTCGCGACTCA 160968 || || || || ||||| | ||||||| ||||| Sbjct 600583 GAATAAGCAATGGGAAAGTGTTTCTCCTCCTCACTCA 600547 >seq3797 Length=1547 Score = 95.1 bits (104), Expect = 1e-14 Identities = 223/337 (66%), Gaps = 0/337 (0%) Strand=Plus/Plus Query 160632 TTCGTCTTGAGCGGAAAGTCGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGCTC 160691 || || |||| ||||||||||| || || ||| | || ||||||||| | || Sbjct 862 TTTGTTTTGATAGGAAAGTCGGTTCCACAGGTGTTCAGCAGGTACTTCCACTGAACGGGA 921 Query 160692 AGGTCGTGCAGGTCCCTCATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTAC 160751 | ||| |||| |||||| || | || ||||| || | |||||| |||||| Sbjct 922 GATTTCAGCAAGTCCTCCATGCAGTTTAGGTCAGCCTGTACCCTTGACCAGGATGCGTAC 981 Query 160752 ACTACGTTCTCTAGTTTACTGGCCACAAAGACGTTATCGAAACACGACACGATTCCCACC 160811 || || || || ||| | || |||||||| || || || || ||||| || || | Sbjct 982 ACCACATTTTCCAGTCTGCTTGCCACAAACACATTGGGAAAGCAGGACACAATGGCCCTC 1041 Query 160812 ACCGCCAGAAAGAACATCTTATCCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGA 160871 || || ||| || | | ||| | ||||| || || || |||| || || Sbjct 1042 ACAGCATTCTTGAAGTCCTCAGATGATTTTTGATCCACATGAACACAGTACACATTGTGT 1101 Query 160872 GGCGCGTAGATGGCCCTGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATA 160931 ||| | || | || | |||| |||||||||||| || || || | |||||||| || Sbjct 1102 GGCACATAAACAGCACGCAGCAGCCTCTCGAACATTTCAATTTTCTCGTGGATCACCATG 1161 Query 160932 GAGTAGGCTATCGGAAACTCGGTCTCCTCGCGACTCA 160968 || || || || ||||| | ||||||| ||||| Sbjct 1162 GAATAAGCAATGGGAAAGTGTTTCTCCTCCTCACTCA 1198 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 577184429758440