Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scleropages_20formosus_20[refseq_20GCF_5F001624265.1_202016-04-20] 4,819 sequences; 777,359,276 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq4299 163 3e-34 seq4161 116 5e-20 seq3987 116 5e-20 seq3946 113 6e-19 seq3905 113 6e-19 seq3939 100 3e-15 >seq4299 Length=10599567 Score = 163 bits (180), Expect = 3e-34 Identities = 160/205 (78%), Gaps = 6/205 (3%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTC---GCGCGTGC 1254399 || ||||||||||||| ||| | ||||||||||||||||||||||| || |||| Sbjct 6951066 GCTTGGCCAGTTCGCCCGGCAGCAGGAGGCGCACGGCGGTCTGGATCTCCCTGCTCGTG- 6951008 Query 1254400 CGATCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGA 1254459 || || ||||||||| |||||||||| ||| |||||| | ||||||| |||| Sbjct 6951007 --ATGGTTGAGCGCTTGTTGTAGTGCGCCAGGCGGGACGCCTCGCCGGCGATGCGCTCGA 6950950 Query 1254460 TCATGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGG 1254519 ||||| ||||||||||| ||||||| ||||| ||| |||||||||| ||||| Sbjct 6950949 AAATGTCATTGACAAACGAATTCATGATGCCCATCGCTTTGGAGGAGATGCCCGTGTCGG 6950890 Query 1254520 GGTGCACCTGCTTGAGCACCTTGTA 1254544 |||| |||||||| ||||| ||||| Sbjct 6950889 GGTGGACCTGCTTCAGCACTTTGTA 6950865 >seq4161 Length=20691 Score = 116 bits (128), Expect = 5e-20 Identities = 147/202 (73%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||| ||||| ||| ||| | || ||||| |||||||| ||||| || | || Sbjct 6188 GCTTGGCAAGTTCTCCGGGCAGCAAGAGACGCACAGCGGTCTGAATCTCTCGGGAAGTGA 6129 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || |||||||| | || |||| ||| ||||| | ||||||| |||| | Sbjct 6128 TGGTCGAACGCTTGTTGTAATGAGCCAAACGAGAAGCCTCACCGGCGATGCGCTCGAAAA 6069 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||||| || ||||||||||||| ||| | |||| |||||||| |||||| | Sbjct 6068 TGTCGTTCACGAACGAGTTCATGATGCCCATAGCCTTGGAAGAGATGCCGGTGTCGGGAT 6009 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 | |||||||| ||||||||||| Sbjct 6008 GGACCTGCTTCAGCACCTTGTA 5987 >seq3987 Length=5478028 Score = 116 bits (128), Expect = 5e-20 Identities = 147/202 (73%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| ||| | || ||||| |||||||||||||| || | || Sbjct 5234463 GCTTGGCCAGCTCTCCGGGCAGCAGAAGACGCACAGCGGTCTGGATCTCCCGGGAAGTGA 5234522 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| |||| ||||| ||| ||||| ||||||| |||| | Sbjct 5234523 TGGTGGAGCGCTTGTTGTAGTGAGCCAGGCGGGAAGCCTCACCAGCGATGCGCTCGAAGA 5234582 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||||| ||||| |||||||||| ||| | ||| || ||||| ||| || | Sbjct 5234583 TGTCGTTCACAAAAGAGTTCATGATGCCCATGGCCTTAGAAGAAATGCCGGTGTCAGGAT 5234642 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 | ||||| ||||| |||||||| Sbjct 5234643 GAACCTGTTTGAGGACCTTGTA 5234664 Score = 116 bits (128), Expect = 5e-20 Identities = 147/202 (73%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| ||| | || ||||| |||||||||||||| || | || Sbjct 5247565 GCTTGGCCAGCTCTCCGGGCAGCAGAAGACGCACAGCGGTCTGGATCTCCCGGGAAGTGA 5247506 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| |||| ||||| ||| ||||| ||||||| |||| | Sbjct 5247505 TGGTGGAGCGCTTGTTGTAGTGAGCCAGGCGGGAAGCCTCACCAGCGATGCGCTCGAAGA 5247446 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||||| ||||| |||||||||| ||| | ||| || ||||| ||| || | Sbjct 5247445 TGTCGTTCACAAAAGAGTTCATGATGCCCATGGCCTTAGAAGAAATGCCGGTGTCAGGAT 5247386 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 | ||||| ||||||||||| || Sbjct 5247385 GAACCTGTTTGAGCACCTTATA 5247364 Score = 114 bits (126), Expect = 2e-19 Identities = 131/176 (74%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 1254369 AGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCGTGTTGCGCTTGTTCGAGTGCGCC 1254428 || ||||| |||||||||||||| || | ||| ||| ||||||||| |||| ||| Sbjct 5255395 AGACGCACAGCGGTCTGGATCTCCCGGGAAGTGATGGTGGAGCGCTTGTTGTAGTGAGCC 5255336 Query 1254429 AGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGACC 1254488 || ||| ||||| ||||||| |||| |||||||| |||||||||||||||| Sbjct 5255335 AGGCGGGAAGCCTCACCAGCGATGCGCTCGAAGATGTCGTTCACAAACGAGTTCATGATG 5255276 Query 1254489 GACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTA 1254544 ||| | ||| || ||||| ||| || || ||||| |||||||||||||| Sbjct 5255275 CCCATGGCCTTAGAAGAAATGCCGGTGTCAGGATGAACCTGTTTGAGCACCTTGTA 5255220 >seq3946 Length=923005 Score = 113 bits (124), Expect = 6e-19 Identities = 146/202 (72%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||| ||||| ||| ||| | || ||||| |||||||| ||||| || | || Sbjct 24054 GCTTGGCAAGTTCTCCGGGCAGCAAGAGACGCACAGCGGTCTGAATCTCTCGGGAAGTGA 23995 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || |||||||| | || |||| ||| ||||| | ||||||| |||| | Sbjct 23994 TGGTCGAACGCTTGTTGTAATGAGCCAAACGAGAAGCCTCACCGGCGATGCGCTCGAAAA 23935 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||||| || ||||||||||||| ||| | |||| |||||||| |||||| | Sbjct 23934 TGTCGTTCACGAACGAGTTCATGATGCCCATAGCCTTGGAAGAGATGCCGGTGTCGGGAT 23875 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 | |||||||| | ||||||||| Sbjct 23874 GGACCTGCTTCAACACCTTGTA 23853 >seq3905 Length=3016556 Score = 113 bits (124), Expect = 6e-19 Identities = 146/202 (72%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || || ||| | ||||||||||| ||||| ||||| || | || Sbjct 2350755 GCTTGGCCAGCTCACCAGGCAACAGAAGGCGCACGGCAGTCTGAATCTCTCGGGAAGTGA 2350814 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || |||||||| |||| |||| ||| ||||| ||||||| || | | Sbjct 2350815 TAGTCGAACGCTTGTTGTAGTGAGCCAAACGTGAAGCCTCACCAGCGATGCGCTCAAAAA 2350874 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||||| |||||||||||||||| ||| | ||| |||||||| |||||| | Sbjct 2350875 TGTCGTTCACAAACGAGTTCATGATGCCCATAGCCTTAGAAGAGATGCCGGTGTCGGGAT 2350934 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 | |||||||| ||||||||||| Sbjct 2350935 GGACCTGCTTCAGCACCTTGTA 2350956 Score = 104 bits (114), Expect = 3e-16 Identities = 144/202 (71%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||||||||| ||| ||| | ||| ||||||||||||| ||||| || | || Sbjct 3011683 GCTTGGCCAGTTCACCGGGCAGCAGGAGGAGCACGGCGGTCTGAATCTCCCGGGAAGTGA 3011624 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || |||||||| | || | || ||| ||||| | ||||||| |||| | Sbjct 3011623 TAGTCGAACGCTTGTTGTAATGAGTCAAACGAGAAGCCTCACCGGCGATGCGCTCGAAAA 3011564 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 | ||||| || ||||||||||||| ||| | || |||||||| | |||||| Sbjct 3011563 TATCGTTCACGAACGAGTTCATGATGCCCATAGCTTTAGAAGAGATGCCGGTGGCGGGGT 3011504 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 | |||||||| |||||||| || Sbjct 3011503 GGACCTGCTTTAGCACCTTATA 3011482 >seq3939 Length=3302458 Score = 100 bits (110), Expect = 3e-15 Identities = 108/141 (77%), Gaps = 3/141 (2%) Strand=Plus/Plus Query 733110 CGCCACGGCCAAAAGGGCACCGTGGGCAGCGTGCGCTCCACCGAGGACATGCCCTGGTCG 733169 ||||||||||| ||||||| | || || | || | || ||||||| ||||||| ||| Sbjct 1415452 CGCCACGGCCAGAAGGGCATCCTGAGCCGGCTGTGGCCCGCCGAGGATATGCCCT--TCG 1415509 Query 733170 CCGCGCGGCGGCGCCACGCCCGACATCGTGATCAACCCGCACGCCATCCCGTCGCGCATG 733229 | | | | |||| | |||||||||| || |||||||||||| | |||| || |||||| Sbjct 1415510 CGGAGAG-CGGCATGATGCCCGACATCTTGTTCAACCCGCACGGCTTCCCCTCCCGCATG 1415568 Query 733230 ACCATGGGCAAGATGCTCGAG 733250 ||||| |||| | | ||||| Sbjct 1415569 ACCATCGGCATGCTCATCGAG 1415589 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106743730292623