Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scleropages_20formosus_20[refseq_20GCF_5F001624265.1_202016-04-20] 4,819 sequences; 777,359,276 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq4299 228 1e-53 seq3987 170 3e-36 seq4161 152 8e-31 seq3905 149 1e-29 seq3946 147 3e-29 seq4363 132 8e-25 seq4031 120 5e-21 seq3989 93.3 7e-13 >seq4299 Length=10599567 Score = 228 bits (252), Expect = 1e-53 Identities = 204/256 (80%), Gaps = 0/256 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||||| ||||| || || |||||| ||||||||||||| ||| Sbjct 6951105 TGTACTTGGTGACGGCCTTGGTGCCCTCGGACACAGCGTGCTTGGCCAGTTCGCCCGGCA 6951046 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||||||||||||||||||||||| | | | ||| || ||||||||| | Sbjct 6951045 GCAGGAGGCGCACGGCGGTCTGGATCTCCCTGCTCGTGATGGTTGAGCGCTTGTTGTAGT 6950986 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 ||||||||||| |||||| | ||||||| |||| ||||| ||||||||||| |||| Sbjct 6950985 GCGCCAGGCGGGACGCCTCGCCGGCGATGCGCTCGAAAATGTCATTGACAAACGAATTCA 6950926 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||||| |||| |||||||||| ||||||||| |||||||| ||||| |||| Sbjct 6950925 TGATGCCCATCGCTTTGGAGGAGATGCCCGTGTCGGGGTGGACCTGCTTCAGCACTTTGT 6950866 Query 1485710 AAACAAAGGACGAGTA 1485725 | ||| || || ||| Sbjct 6950865 ACACATAGATCGCGTA 6950850 >seq3987 Length=5478028 Score = 170 bits (188), Expect = 3e-36 Identities = 184/244 (75%), Gaps = 0/244 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||| |||||||||||||| ||||| ||||| |||||| ||||||| || ||| ||| Sbjct 5247604 TGTACTTAGTGACGGCCTTGGTCCCCTCAGAGACAGCGTGCTTGGCCAGCTCTCCGGGCA 5247545 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | || ||||| |||||||||||||| |||| ||| ||| ||||||||| | Sbjct 5247544 GCAGAAGACGCACAGCGGTCTGGATCTCCCGGGAAGTGATGGTGGAGCGCTTGTTGTAGT 5247485 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | ||||||||| ||||| ||||||| |||| |||||||| ||||| ||||||| Sbjct 5247484 GAGCCAGGCGGGAAGCCTCACCAGCGATGCGCTCGAAGATGTCGTTCACAAAAGAGTTCA 5247425 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | || || ||||| ||| || || ||||| ||||||||||| | Sbjct 5247424 TGATGCCCATGGCCTTAGAAGAAATGCCGGTGTCAGGATGAACCTGTTTGAGCACCTTAT 5247365 Query 1485710 AAAC 1485713 | || Sbjct 5247364 ACAC 5247361 Score = 165 bits (182), Expect = 1e-34 Identities = 183/244 (75%), Gaps = 0/244 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||| || || |||||||| ||||| |||||||||||| ||||||| || ||| ||| Sbjct 5234424 TGTACTTAGTAACAGCCTTGGTCCCCTCAGAGACGGCGTGCTTGGCCAGCTCTCCGGGCA 5234483 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | || ||||| |||||||||||||| |||| ||| ||| ||||||||| | Sbjct 5234484 GCAGAAGACGCACAGCGGTCTGGATCTCCCGGGAAGTGATGGTGGAGCGCTTGTTGTAGT 5234543 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | ||||||||| ||||| ||||||| |||| |||||||| ||||| ||||||| Sbjct 5234544 GAGCCAGGCGGGAAGCCTCACCAGCGATGCGCTCGAAGATGTCGTTCACAAAAGAGTTCA 5234603 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | || || ||||| ||| || || ||||| ||||| ||||||| Sbjct 5234604 TGATGCCCATGGCCTTAGAAGAAATGCCGGTGTCAGGATGAACCTGTTTGAGGACCTTGT 5234663 Query 1485710 AAAC 1485713 | || Sbjct 5234664 ACAC 5234667 Score = 149 bits (164), Expect = 1e-29 Identities = 188/261 (72%), Gaps = 17/261 (7%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||| ||||| |||||||| ||||| |||||||||||| ||||||| || ||| ||| Sbjct 5255477 TGTACTTAGTGACAGCCTTGGTCCCCTCAGAGACGGCGTGCTTGGCCAGCTCTCCGGGCA 5255418 Query 1485530 TGA------TCAGG-----------CGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGT 1485572 | || || ||||| |||||||||||||| |||| ||| || Sbjct 5255417 GCAGAAGTCTCCGGGCAGTAGAAGACGCACAGCGGTCTGGATCTCCCGGGAAGTGATGGT 5255358 Query 1485573 GTTGCGCTTGTTAGTGCGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTC 1485632 | ||||||||| | | ||||||||| ||||| ||||||| |||| ||||| Sbjct 5255357 GGAGCGCTTGTTGTAGTGAGCCAGGCGGGAAGCCTCACCAGCGATGCGCTCGAAGATGTC 5255298 Query 1485633 GTTGACAAACGAGTTCATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCAC 1485692 ||| ||||||||||||||||| ||| | || || ||||| ||| || || || Sbjct 5255297 GTTCACAAACGAGTTCATGATGCCCATGGCCTTAGAAGAAATGCCGGTGTCAGGATGAAC 5255238 Query 1485693 CTGCTTGAGCACCTTGTAAAC 1485713 ||| |||||||||||||| || Sbjct 5255237 CTGTTTGAGCACCTTGTACAC 5255217 >seq4161 Length=20691 Score = 152 bits (168), Expect = 8e-31 Identities = 180/244 (74%), Gaps = 0/244 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| |||||||| ||||| || || || ||| |||| ||||| ||| ||| Sbjct 6227 TGTACTTGGTGACAGCCTTGGTGCCCTCGGACACCGCATGCTTGGCAAGTTCTCCGGGCA 6168 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | || ||||| |||||||| ||||| |||| ||| || |||||||| Sbjct 6167 GCAAGAGACGCACAGCGGTCTGAATCTCTCGGGAAGTGATGGTCGAACGCTTGTTGTAAT 6108 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | |||| || ||||| | ||||||| |||| |||||||| || |||||||||| Sbjct 6107 GAGCCAAACGAGAAGCCTCACCGGCGATGCGCTCGAAAATGTCGTTCACGAACGAGTTCA 6048 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| |||||||| |||||| || |||||||| |||||||||| Sbjct 6047 TGATGCCCATAGCCTTGGAAGAGATGCCGGTGTCGGGATGGACCTGCTTCAGCACCTTGT 5988 Query 1485710 AAAC 1485713 | || Sbjct 5987 ACAC 5984 >seq3905 Length=3016556 Score = 149 bits (164), Expect = 1e-29 Identities = 180/245 (73%), Gaps = 0/245 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||| ||||| |||||||||||||| || || || ||| |||||||||| ||| ||| Sbjct 3011722 TGTACTTAGTGACAGCCTTGGTACCCTCGGACACCGCATGCTTGGCCAGTTCACCGGGCA 3011663 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||| ||||||||||||| ||||| |||| ||| || |||||||| Sbjct 3011662 GCAGGAGGAGCACGGCGGTCTGAATCTCCCGGGAAGTGATAGTCGAACGCTTGTTGTAAT 3011603 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | | || || ||||| | ||||||| |||| || ||||| || |||||||||| Sbjct 3011602 GAGTCAAACGAGAAGCCTCACCGGCGATGCGCTCGAAAATATCGTTCACGAACGAGTTCA 3011543 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| |||||||| | ||||||| |||||||| |||||||| | Sbjct 3011542 TGATGCCCATAGCTTTAGAAGAGATGCCGGTGGCGGGGTGGACCTGCTTTAGCACCTTAT 3011483 Query 1485710 AAACA 1485714 | ||| Sbjct 3011482 ACACA 3011478 Score = 143 bits (158), Expect = 4e-28 Identities = 178/244 (73%), Gaps = 0/244 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||| || ||||| |||||||| ||||| || || |||||| ||||||| || || ||| Sbjct 2350716 TGTATTTAGTGACAGCCTTGGTGCCCTCGGACACTGCGTGCTTGGCCAGCTCACCAGGCA 2350775 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||||||||||| ||||| ||||| |||| ||| || |||||||| | Sbjct 2350776 ACAGAAGGCGCACGGCAGTCTGAATCTCTCGGGAAGTGATAGTCGAACGCTTGTTGTAGT 2350835 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | |||| || ||||| ||||||| || | |||||||| ||||||||||||| Sbjct 2350836 GAGCCAAACGTGAAGCCTCACCAGCGATGCGCTCAAAAATGTCGTTCACAAACGAGTTCA 2350895 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | || |||||||| |||||| || |||||||| |||||||||| Sbjct 2350896 TGATGCCCATAGCCTTAGAAGAGATGCCGGTGTCGGGATGGACCTGCTTCAGCACCTTGT 2350955 Query 1485710 AAAC 1485713 | || Sbjct 2350956 ACAC 2350959 >seq3946 Length=923005 Score = 147 bits (162), Expect = 3e-29 Identities = 179/244 (73%), Gaps = 0/244 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| |||||||| ||||| || || || ||| |||| ||||| ||| ||| Sbjct 24093 TGTACTTGGTGACAGCCTTGGTGCCCTCGGACACCGCATGCTTGGCAAGTTCTCCGGGCA 24034 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | || ||||| |||||||| ||||| |||| ||| || |||||||| Sbjct 24033 GCAAGAGACGCACAGCGGTCTGAATCTCTCGGGAAGTGATGGTCGAACGCTTGTTGTAAT 23974 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | |||| || ||||| | ||||||| |||| |||||||| || |||||||||| Sbjct 23973 GAGCCAAACGAGAAGCCTCACCGGCGATGCGCTCGAAAATGTCGTTCACGAACGAGTTCA 23914 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| |||||||| |||||| || |||||||| | |||||||| Sbjct 23913 TGATGCCCATAGCCTTGGAAGAGATGCCGGTGTCGGGATGGACCTGCTTCAACACCTTGT 23854 Query 1485710 AAAC 1485713 | || Sbjct 23853 ACAC 23850 >seq4363 Length=9679714 Score = 132 bits (146), Expect = 8e-25 Identities = 166/225 (74%), Gaps = 2/225 (1%) Strand=Plus/Plus Query 1485472 TACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATG 1485531 ||||||||||||||||| || ||||| || ||||||||| |||||| || ||| ||| Sbjct 8923677 TACTTGGTGACGGCCTTAGTGCCCTCGGACACGGCGTGCTTGGCCAACTCCCCGGGCAGA 8923736 Query 1485532 ATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC-G 1485590 | |||||||||||| ||||| | ||||||| | ||| || |||| ||| || | | Sbjct 8923737 AGCAGGCGCACGGCTGTCTGCACCTCGCGGCTCGTGATGGTCGAGCGCCGGTT-GTACTG 8923795 Query 1485591 CGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCAT 1485650 || ||||| || || ||| |||| || || | || ||||| ||||| || ||||| Sbjct 8923796 CGTGAGGCGCGACGCTTCAGTGGCGATACGCTCAAACACATCGTTCACAAAGGAATTCAT 8923855 Query 1485651 GATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTG 1485695 ||| ||| | || ||||||||||| ||| || || ||||| Sbjct 8923856 GATGCTCATGGCCCTGCTGGAGATGCCCGTGTCAGGATGGACCTG 8923900 >seq4031 Length=4291168 Score = 120 bits (132), Expect = 5e-21 Identities = 173/244 (71%), Gaps = 0/244 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||||||||| |||||||| || || |||||| | || ||||| || ||| Sbjct 3587298 TGTACTTGGTGACGGCCTTTGTACCCTCGGACACCGCGTGCTTAGCTAGTTCACCAGGCA 3587357 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | |||||||| || ||||| ||||| |||| ||| || ||| ||||| Sbjct 3587358 GCAGAAGGCGCACAGCAGTCTGAATCTCCCGGGAAGTGATAGTCGAGCGTTTGTTGTAAT 3587417 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | |||| || || || ||||||| || | |||||||| || |||||||||| Sbjct 3587418 GGGCCAAACGAGAAGCTTCTCCAGCGATGCGCTCAAAGATGTCGTTCACGAACGAGTTCA 3587477 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | |||| || || || || || || |||||||| || ||||||| Sbjct 3587478 TGATTCCCATTGCTTTGGAAGAAATCCCAGTATCAGGATGAACCTGCTTTAGTACCTTGT 3587537 Query 1485710 AAAC 1485713 | || Sbjct 3587538 AGAC 3587541 >seq3989 Length=9007450 Score = 93.3 bits (102), Expect = 7e-13 Identities = 89/114 (78%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 796303 ACCTCCTCGGCGGTCCAAAAGGAGGCCTCGGCCTTTTTGTACATCTCCCATATCCGTTGG 796362 |||||||| || ||||| ||||||||||| ||||| |||||||| | ||| || ||| Sbjct 3294330 ACCTCCTCTGCCGTCCAGAAGGAGGCCTCTGCCTTCTTGTACATTTGCCAGATGTCGTGG 3294389 Query 796363 TAGCGGATGGGGAACAGAACAAAGCGATTGGGGTTCTCGCGTAGCAGCGGCTCG 796416 || |||||||||| | |||||||| | ||||| || | || ||||||||| Sbjct 3294390 TACTGGATGGGGAAGATGACAAAGCGCTGCGGGTTGTCCCTCAGGAGCGGCTCG 3294443 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7915733780990541