Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scleropages_20formosus_20[refseq_20GCF_5F001624265.1_202016-04-20] 4,819 sequences; 777,359,276 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq3913 244 8e-59 seq4299 125 5e-23 seq4012 114 1e-19 >seq3913 Length=1546322 Score = 244 bits (270), Expect = 8e-59 Identities = 935/1457 (64%), Gaps = 12/1457 (1%) Strand=Plus/Plus Query 281426 GCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACC 281485 |||| ||||| || || ||||| ||||| | || || || ||||| ||||| ||||| Sbjct 688469 GCAGAAACATTCAGGATCCCATTTGCATCAATGTCGAAGGTCACTTCGATTTGGGGGACT 688528 Query 281486 CCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTA 281545 |||| | | ||||| ||||| || | | ||| | ||||| || || || || Sbjct 688529 CCTCGCGGGGCAGGAGGGATGCCAGTGAGTTCAAACTTGCCCAGCAAGTTGTTGTCCTTG 688588 Query 281546 GTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAA 281605 || | || ||| || || | | ||||| ||| | | || || ||||| || Sbjct 688589 GTCATGGCTCTTTCGCCTTCATATACCTGGATCAAGACTCCTGGCTGGTTGTCTGAGTAC 688648 Query 281606 GTTGTAAATACTCTGGATTT-TTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGT 281664 || || ||| ||||| ||| ||| || || || ||||| | | || | | || Sbjct 688649 GTAGTGAATG-TCTGGGTTTGTTTGGTGGGGATGGTGGTGTTGCGTTTGATGAGAGGAGT 688707 Query 281665 CATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAAT 281724 ||| | ||||| ||||| || | ||| ||||| ||||| | ||||| | || | | Sbjct 688708 CATGACTCCACCTGCTGTCTCAATACCCAGAGACAGAGGTGCCACATCCAGCAGCAGCAG 688767 Query 281725 ATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATA 281784 | || | || ||| || | ||| | || || ||||| || | ||| || ||||| Sbjct 688768 GTCCTGGATGTTCTCAGAGGTGTCACCCATGAGGATGGCTGCCTGTACAGCTGCCCCATA 688827 Query 281785 TGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTTGA 281844 ||| || |||||||| ||||| | | | || || | | || ||||| |||| Sbjct 688828 TGCCACCGCTTCATCTGGATTGATGCTCTTGTTCAGCTCCCTGCCGTTGAAGAAATCCTG 688887 Query 281845 AAGAAGTTGTCTT-ACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCA 281903 || || | ||| | |||||| || || | || |||||||| | || || || || | Sbjct 688888 CAGCAGCT-TCTGGATCTTAGGGATTCGGGTGGAGCCTCCAACCAGCACGATATCGTGGA 688946 Query 281904 CCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCAGCTC 281963 ||| || || |||| ||| | ||| | |||| || || || || || ||| Sbjct 688947 TCTGCGACTTGTCCATTTTGGCATCTCTCAGGGCTTTCTCCACTGGGTCCAGGGTTCCTC 689006 Query 281964 TAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACAT-TATAA-TC 282021 | || | ||| ||| |||||||| || || || || || || | || || || Sbjct 689007 TGAAAAGGTCCGAATTCAGTTCTTCAAAGCGTGCCCTTGT--GATGGATGTGTAGAAGTC 689064 Query 282022 AATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACG 282081 ||| ||||| ||| ||| |||| |||||| | | || | || || || | | Sbjct 689065 AATGCCTTCATACAGAGAGTCAATTTCAATGCTGGCCTGCGAGCTCGAGGACAGGGTTCT 689124 Query 282082 TTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGC--TTTTGCTGATTGATTCAAA 282139 || || ||||| ||||| || | || || | | || | ||| | ||| | | Sbjct 689125 CTTGGCCCGTTCGCATGCCGTACGCAGCCTCCTCAGCGCCCTCTTGTT--TTGGCTGATG 689182 Query 282140 TCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAA 282199 || | || |||| |||||||| || || ||| | | || | ||||| ||||| Sbjct 689183 TCCTTCTTGCATTTCCTCTTGAACTCCTCCACAAAGTGATTGACCATGCGATTGTCAAAG 689242 Query 282200 TCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCA 282259 || || || |||| | ||| | |||| ||| || | || | ||| | ||||| ||| Sbjct 689243 TCCTCCCCACCCAGGTGAGTGTCCCCTGCCGTGGCCTTCACCTCGAAGATGCCATCCTCA 689302 Query 282260 AGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATT 282319 | | || | | |||||| ||| ||||| |||| || || || | ||||| Sbjct 689303 ATGGTCAGGATGGACACATCAAAGGTACCACCCCCCAAGTCGAAGATCAAGACATTGCGC 689362 Query 282320 TCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATA 282379 || | | | || || |||||||| |||| |||||| || || |||||||| || Sbjct 689363 TCACCCTTCTTGCCCTTGTCGAGACCATAAGCAATAGCAGCTGCTGTGGGTTCATTGATG 689422 Query 282380 ATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAA 282439 || || | ||||| || |||||||| ||| |||||||||||||| || | || || Sbjct 689423 ATCCTGAGCACATTCAGCCCAGCAATCACTCCAGCATCTTTAGTGGCCTGGCGCTGCGAG 689482 Query 282440 TCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAATATAAGCG 282499 || || || || || || || || || || |||| | || | | ||| | || || Sbjct 689483 TCATTGAAGTAGGCGGGCACCGTGATGACTGCATTGGACACCTTCTGTCCCAGGTACGCC 689542 Query 282500 CTTGCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGAGAATATTGC 282559 || | | |||||||| | | ||| || || |||| ||| || || || Sbjct 689543 TCAGCAATCTCCTTCATTTTTACCAGCACCATGGAGGAGATTTCTTCCGGGTAAAATGCT 689602 Query 282560 TTGGATTCATTTTGATATGATACTTCAAAATATGGTTTATTACCAACATTAATAACTTTA 282619 |||| || || || ||| | || | ||||| ||| || | || || || Sbjct 689603 TTGGTCTCTCCTTTGTACTCTACCTGAACTTTGGGTTTTCCTCCATCACTGATCACCTTG 689662 Query 282620 AATGGCCAATATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTAAT 282679 || ||||| | ||||| || || || || |||| | ||| | || || || | Sbjct 689663 AAGGGCCAGTGCTTCATGTCAGACTGCACCACGGGGTCCTCAAACTTCCTGCCGATCAGC 689722 Query 282680 CGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCATCT 282739 || || ||||||||||| || ||| | || || | || | || | ||||| |||||| Sbjct 689723 CGCTTGGCATCAAAAATGGTGTTGTTGGGGTTCATGGCCACCTGGTTCTTGGCAGCATCT 689782 Query 282740 CCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGA 282799 ||||| || ||||| ||||| || | || || ||||||||| | ||| || || Sbjct 689783 CCAATGAGCCTCTCTGTGTCTGTGAAGGCCACGTAACTTGGAGTTGTTCTATTGCCCTGG 689842 Query 282800 TCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTT 282859 ||||| || || ||||| || || |||| || | || || ||||| | || || Sbjct 689843 TCATTAGCGATGATTTCCACCTTTCCATGCTGAAACACCCCCACACAGGAGTAGGTGGTG 689902 Query 282860 CCTAAATCAATACCAAT 282876 || | |||||| ||||| Sbjct 689903 CCCAGATCAATGCCAAT 689919 >seq4299 Length=10599567 Score = 125 bits (138), Expect = 5e-23 Identities = 113/142 (80%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391 || || || || ||||| |||| ||||||||| ||||| ||||| || |||| || |||| Sbjct 6915869 TTCTTGTCCAGGCCATAGGCAATAGCAGCAGCTGTTGGCTCATTGATGATTCGCAGAACA 6915928 Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451 || | || | |||| |||||||||||||||| || || | ||| |||||||| || ||| Sbjct 6915929 TTCAAGCCCGAAATTGTTCCTGCATCTTTAGTAGCCTGACGTTGAGAATCGTTGAAGTAT 6915988 Query 282452 GCAGGAACAGTAATAACGGCAT 282473 || || |||||||| || |||| Sbjct 6915989 GCTGGCACAGTAATTACAGCAT 6916010 Score = 107 bits (118), Expect = 1e-17 Identities = 113/149 (76%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391 |||||||| | || || |||| ||||||||||||||||||||||| |||| | ||| Sbjct 6936277 TTTTTATCCAAGCCGTATGCAATGGCAGCAGCAGTTGGTTCATTAATTATTCGTAGTACA 6936218 Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451 || || |||| |||| | || ||||| || |||||||| | || || || || || || Sbjct 6936217 TTTAGCCCAGAAATTGTACCAGCATCCTTGGTGGCTTGGCGCTGGGAGTCATTGAAGTAG 6936158 Query 282452 GCAGGAACAGTAATAACGGCATCTGTTAC 282480 || || || || ||||| |||| ||| || Sbjct 6936157 GCTGGTACTGTTATAACAGCATTTGTAAC 6936129 Score = 105 bits (116), Expect = 5e-17 Identities = 139/193 (72%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 282687 CATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCATCTCCAATCA 282746 || |||| | || || ||||| || | |||| | |||| ||| |||||||| ||||||| Sbjct 6916737 CACCAAACACTGTGTTAGTTGGGTTCATTGCAACCTGATTTTTTGCTGCATCCCCAATCA 6916796 Query 282747 GATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCG 282806 | |||||| || || |||| |||||| || || || | || || || ||||| | Sbjct 6916797 AACGTTCTGAATCAGTGAATGCAACATAGCTGGGTGTGGTCCTGTTGCCCTGGTCATTGG 6916856 Query 282807 CAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAAT 282866 |||| || || ||||| |||| ||| | ||||| ||||| | || || || | || Sbjct 6916857 CAATGATCTCCACTTTGCCATGTTGGAAAACACCCACACAGGAGTAGGTGGTCCCCAGAT 6916916 Query 282867 CAATACCAATAGC 282879 ||||||||| ||| Sbjct 6916917 CAATACCAACAGC 6916929 Score = 96.9 bits (106), Expect = 3e-14 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 86116 AAACCGTATGCAAGAGCTGCTGCAGTTGGTTCATTAATTATTTTAAGAACATCTAAACCC 86175 || |||||||||| || || ||||||||||||||||||||| || |||| || || Sbjct 6936268 AAGCCGTATGCAATGGCAGCAGCAGTTGGTTCATTAATTATTCGTAGTACATTTAGCCCA 6936209 Query 86176 GCAATTTTAGCAGAATCAAGAGTTGCTTGTCTCTGTGCGTCATTAAAATATGCTGGTACA 86235 | |||| || ||| ||| || ||||| | ||| | |||||| || || |||||||| Sbjct 6936208 GAAATTGTACCAGCATCCTTGGTGGCTTGGCGCTGGGAGTCATTGAAGTAGGCTGGTACT 6936149 Query 86236 GTAATAACTGCTTTATTAATAGG 86258 || ||||| || || ||| ||| Sbjct 6936148 GTTATAACAGCATTTGTAACAGG 6936126 Score = 93.3 bits (102), Expect = 3e-13 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 282690 CAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCATCTCCAATCAGAT 282749 |||| | || || ||||| || | |||| | |||| ||| |||||||| || |||| | Sbjct 6935587 CAAACACCGTGTTAGTTGGGTTCATTGCAACCTGATTTTTTGCTGCATCCCCGATCAAAC 6935528 Query 282750 GTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAA 282809 |||| | || || |||| |||||| || || || | || || || ||||| |||| Sbjct 6935527 GTTCACTATCCGTGAATGCAACATAGCTGGGTGTGGTCCTGTTGCCCTGGTCATTGGCAA 6935468 Query 282810 TAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATCAA 282869 | || || ||||| |||| ||| | ||||| ||||| | || || || | ||||| Sbjct 6935467 TGATCTCCACTTTGCCATGTTGGAAAACACCCACACAGGAGTAGGTGGTCCCCAGATCAA 6935408 Query 282870 TACCAATAGCAATTTTATCTGACATTATT 282898 |||||| ||| | | ||||||| || Sbjct 6935407 TACCAACTGCAGCTCCCTTTGACATTGTT 6935379 >seq4012 Length=935771 Score = 114 bits (126), Expect = 1e-19 Identities = 114/148 (77%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391 || ||||| || ||||| |||| ||| || ||||| |||||||| || || | |||||| Sbjct 173542 TTCTTATCCAGGCCATATGCAATAGCTGCTGCAGTAGGTTCATTGATGATACGTAAAACA 173483 Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451 ||||| |||| ||| |||| ||||| || |||||||||| || || || || || || Sbjct 173482 TTAAGCCCAGAAATCGTTCCAGCATCCTTGGTGGCTTGTCGCTGAGAGTCATTGAAGTAG 173423 Query 282452 GCAGGAACAGTAATAACGGCATCTGTTA 282479 ||||| || ||||| || || | ||||| Sbjct 173422 GCAGGTACCGTAATGACAGCGTTTGTTA 173395 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740393807465094