Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scleropages_20formosus_20[refseq_20GCF_5F001624265.1_202016-04-20] 4,819 sequences; 777,359,276 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq4299 143 5e-29 seq4004 111 3e-19 seq4020 93.3 8e-14 >seq4299 Length=10599567 Score = 143 bits (158), Expect = 5e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||| || | ||| || || | ||| ||||| || || ||||| || || || || || Sbjct 10426334 CCTCCCCTGAGACGGAGCACCAGGTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAC 10426275 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | || ||||| ||||| || ||||||||||| || || || || || ||||| Sbjct 10426274 AGGGTGCGGCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGA 10426215 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || ||||| || || || || || ||||| || || ||||| || || | ||||| || Sbjct 10426214 ATGCCTTCTTTGTCCTGGATTTTCGCTTTCACGTTCTCAATTGTGTCGCTGGGTTCAACC 10426155 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||| || || |||||||| || | |||||| ||||| |||||||| Sbjct 10426154 TCCAGGGTGATGGTCTTGCCCGTGAGCGTCTTCACAAAGATCTGCAT 10426108 Score = 140 bits (154), Expect = 6e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || || || | ||| || || | ||| ||||| || || ||||| || || || || || Sbjct 10426106 CCCCCCCTGAGACGGAGCACCAGGTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAC 10426047 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | || ||||| ||||| || ||||||||||| || || || || || ||||| Sbjct 10426046 AGGGTGCGGCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGA 10425987 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || ||||| || || || || || ||||| || || ||||| || || | ||||| || Sbjct 10425986 ATGCCTTCTTTGTCCTGGATTTTCGCTTTCACGTTCTCAATTGTGTCGCTGGGTTCAACC 10425927 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||| || || |||||||| || | |||||| ||||| |||||||| Sbjct 10425926 TCCAGGGTGATGGTCTTGCCCGTGAGCGTCTTCACAAAGATCTGCAT 10425880 >seq4004 Length=1791360 Score = 111 bits (122), Expect = 3e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||| | | ||| || || | ||| || || || || ||||| || || || || || Sbjct 83938 CCTCCACGAAGACGGAGGACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAC 83997 Query 82644 AGAATTCTACCG-TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGG 82702 || | | || ||||| || || || ||||||||||| || || || || || || || Sbjct 83998 AGGGTGCCGCCCATCTTC-AGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGG 84056 Query 82703 TATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTAC 82762 || |||||||| || || || || || || ||||| ||||| || ||| | || || || Sbjct 84057 AATGCCTTCCTTGTCCTGGATTTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCCAC 84116 Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | || || |||||||| || | ||||| ||||| |||||||| Sbjct 84117 CTCTAGGGTGATGGTCTTGCCGGTTAGGGTCTTCACAAAGATCTGCAT 84164 >seq4020 Length=2648434 Score = 93.3 bits (102), Expect = 8e-14 Identities = 83/104 (80%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 82707 CCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCC 82766 ||||||||||| |||||||| || || |||||||||||||| ||| | ||||| || || Sbjct 1596343 CCTTCCTTATCCTGAATCTTGGCCTTCACATTTTCAATCGTGTCACTGGGTTCCACCTCA 1596402 Query 82767 AAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | || || ||||| || || || || || ||||| |||||||| Sbjct 1596403 AGGGTGATGGTCTTCCCCGTTAAAGTTTTCACAAAAATCTGCAT 1596446 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981766578613641