Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scleropages_20formosus_20[refseq_20GCF_5F001624265.1_202016-04-20] 4,819 sequences; 777,359,276 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq3989 93.3 5e-14 >seq3989 Length=9007450 Score = 93.3 bits (102), Expect = 5e-14 Identities = 232/348 (67%), Gaps = 6/348 (2%) Strand=Plus/Plus Query 176945 GGCCAGTTCTATAGGGGACGTGTAGTCGTTCACGTGAATGAAAGCGTCTCCCGGGACGTA 177004 ||||| ||| | |||||| | | || | ||| || |||||||| | ||| || ||| | Sbjct 1058255 GGCCAACTCTTTTGGGGACAGGAAATCATCCACATGTATGAAAGCATTTCCAGGAACGAA 1058314 Query 177005 ATTTTCGTAATTCTCTCTCGATGTTCCGAGTACTATGGGTACCGCACCTGCCATAAGAGA 177064 || || || |||| ||| || | ||| || || || || || | || | || | Sbjct 1058315 GTTCTCATAGTTCTGTCTTGAGGGTCCAAGAACAATTGGCACTGAGCCCACAGATAGTGG 1058374 Query 177065 TCGGTAGAGTTTTTCGGTAATATAGTCCCTGTGTACGGAGTTCTCAAACGCGAGATAGAA 177124 |||||||||||| ||||||||||| |||| | || |||||||| | ||||| || Sbjct 1058375 GTTGTAGAGTTTTTCAGTAATATAGTCTTTGTGGATTGAATTCTCAAATGACAGATAAAA 1058434 Query 177125 TTTACAGGAAGATAGTAGCGGG-ATGAAGTCATCATCGGGTATATAATCTCCTACTACGT 177183 |||||| | | | | | ||| | ||| || | || || || || || | | | Sbjct 1058435 TTTACA-GCTGGCAATGGTGGGAAAGAAATCTTTCTCACTGATGTATTCCCCAAAGGCTT 1058493 Query 177184 TCCCGTATACATGTATATCTATGTGTT--TACTGAGCTCTAGGTAGTATCTCGATCTCAC 177241 ||||| |||||| || ||||| | ||| ||||| ||||| || || Sbjct 1058494 GGCCGTAAGTATGTATTTCAATGTGCTGGTAC--AGCTCATTATAGTACTTCACCCTAGT 1058551 Query 177242 GTGGTCGTTGTTCCAATTGCTGACGACCCAGCAAACTAACTTGCTCTT 177289 ||| || |||||| || || || | ||||||||||||||| |||| Sbjct 1058552 GTGTTCCGGGTTCCAGTTACTTACAATCCAGCAAACTAACTTAGTCTT 1058599 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578397156702400