Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scleropages_20formosus_20[refseq_20GCF_5F001624265.1_202016-04-20] 4,819 sequences; 777,359,276 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq4299 163 4e-34 seq3987 134 2e-25 seq4161 122 1e-21 seq3946 116 5e-20 seq3905 116 5e-20 seq4363 105 1e-16 seq3989 105 1e-16 seq4031 89.7 7e-12 seq3939 86.0 9e-11 seq3898 86.0 9e-11 >seq4299 Length=10599567 Score = 163 bits (180), Expect = 4e-34 Identities = 177/232 (76%), Gaps = 12/232 (5%) Strand=Plus/Plus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||| ||||| |||||||| |||||| || || |||| ||| ||| | ||| Sbjct 6950865 TACAAAGTGCTGAAGCAGGTCCACCCCGACAC-----GGGCATC-TCCTCCAAAGCGATG 6950918 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 |||||||| ||||||||||| ||||| |||| ||||||| | |||||| ||| Sbjct 6950919 GGCATCATGAATTCGTTTGTCAATGACATTTTCGAGCGCATCGCCGGCGAGGCGTCCCGC 6950978 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGC---GAGATCCAGACCGCCGTG 725090 ||||||| || |||||||||| || || |||| || |||||||||||||||||| Sbjct 6950979 CTGGCGCACTACAACAAGCGCTCAACCAT---CACGAGCAGGGAGATCCAGACCGCCGTG 6951035 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||||| | ||| ||||||||||||| |||||| || ||||||||||||| Sbjct 6951036 CGCCTCCTGCTGCCGGGCGAACTGGCCAAGCACGCTGTGTCCGAGGGCACCA 6951087 >seq3987 Length=5478028 Score = 134 bits (148), Expect = 2e-25 Identities = 168/229 (73%), Gaps = 6/229 (3%) Strand=Plus/Minus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 |||||||| ||||| ||||| || || |||| || | || | | || ||||| Sbjct 5234664 TACAAGGTCCTCAAACAGGTTCATCCTGACACCG----GCATTTCTTCTA--AGGCCATG 5234611 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 ||||||||||| ||||| |||||||| |||| ||||||| ||||| ||| Sbjct 5234610 GGCATCATGAACTCTTTTGTGAACGACATCTTCGAGCGCATCGCTGGTGAGGCTTCCCGC 5234551 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||| | || |||||||||| ||| ||| | || |||||||||||||| ||||| Sbjct 5234550 CTGGCTCACTACAACAAGCGCTCCACCATCACTTCCCGGGAGATCCAGACCGCTGTGCGT 5234491 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || | ||| ||| || ||||||| |||||||||||| ||||| |||| Sbjct 5234490 CTTCTGCTGCCCGGAGAGCTGGCCAAGCACGCCGTCTCTGAGGGGACCA 5234442 Score = 131 bits (144), Expect = 2e-24 Identities = 167/229 (73%), Gaps = 6/229 (3%) Strand=Plus/Plus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 || ||||||||||| ||||| || || |||| || | || | | || ||||| Sbjct 5247364 TATAAGGTGCTCAAACAGGTTCATCCTGACACCG----GCATTTCTTCTA--AGGCCATG 5247417 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 ||||||||||| ||||| |||||||| |||| ||||||| ||||| ||| Sbjct 5247418 GGCATCATGAACTCTTTTGTGAACGACATCTTCGAGCGCATCGCTGGTGAGGCTTCCCGC 5247477 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||| | || |||||||||| ||| ||| | || |||||||||||||| ||||| Sbjct 5247478 CTGGCTCACTACAACAAGCGCTCCACCATCACTTCCCGGGAGATCCAGACCGCTGTGCGT 5247537 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || | ||| ||| || ||||||| |||||| ||||| ||||| |||| Sbjct 5247538 CTTCTGCTGCCCGGAGAGCTGGCCAAGCACGCTGTCTCTGAGGGGACCA 5247586 Score = 113 bits (124), Expect = 6e-19 Identities = 172/246 (70%), Gaps = 23/246 (9%) Strand=Plus/Plus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 |||||||||||||| ||||| || || |||| || | || | | || ||||| Sbjct 5255220 TACAAGGTGCTCAAACAGGTTCATCCTGACACCG----GCATTTCTTCTA--AGGCCATG 5255273 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 ||||||||||||||||| |||||||| |||| ||||||| ||||| ||| Sbjct 5255274 GGCATCATGAACTCGTTTGTGAACGACATCTTCGAGCGCATCGCTGGTGAGGCTTCCCGC 5255333 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCG- 725092 ||||| | || |||||||||| ||| ||| | || |||||||||||||| ||||| Sbjct 5255334 CTGGCTCACTACAACAAGCGCTCCACCATCACTTCCCGGGAGATCCAGACCGCTGTGCGT 5255393 Query 725093 ----------CCTGA------TCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGG 725136 || || | ||| ||| || ||||||| |||||||||||| |||| Sbjct 5255394 CTTCTACTGCCCGGAGACTTCTGCTGCCCGGAGAGCTGGCCAAGCACGCCGTCTCTGAGG 5255453 Query 725137 GCACCA 725142 | |||| Sbjct 5255454 GGACCA 5255459 >seq4161 Length=20691 Score = 122 bits (134), Expect = 1e-21 Identities = 165/229 (72%), Gaps = 6/229 (3%) Strand=Plus/Plus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| |||||||| || ||| |||| |||| || |||| | ||| Sbjct 5987 TACAAGGTGCTGAAGCAGGTCCATCCCGACACCGG-----CATC-TCTTCCAAGGCTATG 6040 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 |||||||||||||| || |||||||| |||| ||||||| | ||||| ||| Sbjct 6041 GGCATCATGAACTCGTTCGTGAACGACATTTTCGAGCGCATCGCCGGTGAGGCTTCTCGT 6100 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 |||| | | ||||||||| || ||| | || ||||| |||||||| ||||| Sbjct 6101 TTGGCTCATTACAACAAGCGTTCGACCATCACTTCCCGAGAGATTCAGACCGCTGTGCGT 6160 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || | ||| ||| ||||| |||| ||| || || ||||||||||||| Sbjct 6161 CTCTTGCTGCCCGGAGAACTTGCCAAGCATGCGGTGTCCGAGGGCACCA 6209 >seq3946 Length=923005 Score = 116 bits (128), Expect = 5e-20 Identities = 164/229 (72%), Gaps = 6/229 (3%) Strand=Plus/Plus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||| | |||||||| || ||| |||| |||| || |||| | ||| Sbjct 23853 TACAAGGTGTTGAAGCAGGTCCATCCCGACACCGG-----CATC-TCTTCCAAGGCTATG 23906 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 |||||||||||||| || |||||||| |||| ||||||| | ||||| ||| Sbjct 23907 GGCATCATGAACTCGTTCGTGAACGACATTTTCGAGCGCATCGCCGGTGAGGCTTCTCGT 23966 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 |||| | | ||||||||| || ||| | || ||||| |||||||| ||||| Sbjct 23967 TTGGCTCATTACAACAAGCGTTCGACCATCACTTCCCGAGAGATTCAGACCGCTGTGCGT 24026 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || | ||| ||| ||||| |||| ||| || || ||||||||||||| Sbjct 24027 CTCTTGCTGCCCGGAGAACTTGCCAAGCATGCGGTGTCCGAGGGCACCA 24075 >seq3905 Length=3016556 Score = 116 bits (128), Expect = 5e-20 Identities = 164/229 (72%), Gaps = 6/229 (3%) Strand=Plus/Minus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| |||||||| || ||| |||| |||| || ||| | ||| Sbjct 2350956 TACAAGGTGCTGAAGCAGGTCCATCCCGACACCGG-----CATC-TCTTCTAAGGCTATG 2350903 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 ||||||||||||||||| |||||||| | || ||||||| ||||| || Sbjct 2350902 GGCATCATGAACTCGTTTGTGAACGACATTTTTGAGCGCATCGCTGGTGAGGCTTCACGT 2350843 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 |||| | || ||||||||| || ||| | || ||||| ||||| ||||||||| Sbjct 2350842 TTGGCTCACTACAACAAGCGTTCGACTATCACTTCCCGAGAGATTCAGACTGCCGTGCGC 2350783 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || | ||| || || ||||||| |||||| || ||||||||||||| Sbjct 2350782 CTTCTGTTGCCTGGTGAGCTGGCCAAGCACGCAGTGTCCGAGGGCACCA 2350734 Score = 111 bits (122), Expect = 2e-18 Identities = 165/230 (72%), Gaps = 8/230 (3%) Strand=Plus/Plus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATC-CTCCAACAAGTCCAT 724972 || |||||||| |||||||| |||||| |||| |||| || | | ||| | || Sbjct 3011482 TATAAGGTGCTAAAGCAGGTCCACCCCGCCACCGG-----CATCTCTTCTA-AAG-CTAT 3011534 Query 724973 GTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCG 725032 | |||||||||||||| || ||||| || |||| ||||||| | ||||| ||| Sbjct 3011535 GGGCATCATGAACTCGTTCGTGAACGATATTTTCGAGCGCATCGCCGGTGAGGCTTCTCG 3011594 Query 725033 CCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCG 725092 || | | | ||||||||| || ||| | || ||||| ||||||||||||| Sbjct 3011595 TTTGACTCATTACAACAAGCGTTCGACTATCACTTCCCGGGAGATTCAGACCGCCGTGCT 3011654 Query 725093 CCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| | ||| ||| |||||||||| ||| || || |||||||| |||| Sbjct 3011655 CCTCCTGCTGCCCGGTGAACTGGCCAAGCATGCGGTGTCCGAGGGTACCA 3011704 >seq4363 Length=9679714 Score = 105 bits (116), Expect = 1e-16 Identities = 133/183 (73%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 724958 CTCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGG 725017 ||||| || | ||||| |||||||| || ||||| ||||| || | || || |||| Sbjct 8923877 CTCCAGCAGGGCCATGAGCATCATGAATTCCTTTGTGAACGATGTGTTTGAGCGTATCGC 8923818 Query 725018 CACCGAGGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGAT 725077 ||| || || ||||| ||| | |||| |||| || ||| | |||||| | Sbjct 8923817 CACTGAAGCGTCGCGCCTCACGCAGTACAACCGGCGCTCGACCATCACGAGCCGCGAGGT 8923758 Query 725078 CCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGG 725137 ||||| |||||||||||| | ||| ||| || |||||| ||||||||| |||||||| Sbjct 8923757 GCAGACAGCCGTGCGCCTGCTTCTGCCCGGGGAGTTGGCCAAGCACGCCGTGTCCGAGGG 8923698 Query 725138 CAC 725140 ||| Sbjct 8923697 CAC 8923695 >seq3989 Length=9007450 Score = 105 bits (116), Expect = 1e-16 Identities = 93/115 (81%), Gaps = 1/115 (1%) Strand=Plus/Minus Query 1455715 CGAGCCGCTGCTGCGCGATAACCCGAACCGCTTTGTCCTGTTCCCCATCCGCTACCAGCG 1455774 ||||||||| ||| | || |||||| | ||||||||| | |||||||||| ||||| Sbjct 3294443 CGAGCCGCTCCTGAGGGACAACCCGCAGCGCTTTGTCATCTTCCCCATCCAGTACCACGA 3294384 Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGT 1455829 || ||| |||||||| || ||||| ||||||||||| ||||| || |||||||| Sbjct 3294383 CATCTGGCAAATGTAC-AAGAAGGCAGAGGCCTCCTTCTGGACGGCAGAGGAGGT 3294330 >seq4031 Length=4291168 Score = 89.7 bits (98), Expect = 7e-12 Identities = 159/229 (69%), Gaps = 6/229 (3%) Strand=Plus/Minus Query 724912 TCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCA 724971 |||||||||| || |||||||| || || || |||| || ||||| || | | Sbjct 3587540 TCTACAAGGTACTAAAGCAGGTTCATCCTGATAC---TGGGATTTCTTCCAA--AG-CAA 3587487 Query 724972 TGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTC 725031 || |||||||||||||| || |||||||| | || ||||||| || || || Sbjct 3587486 TGGGAATCATGAACTCGTTCGTGAACGACATCTTTGAGCGCATCGCTGGAGAAGCTTCTC 3587427 Query 725032 GCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGC 725091 | |||| | | |||||| ||| || ||| | || ||||| ||||| || |||| Sbjct 3587426 GTTTGGCCCATTACAACAAACGCTCGACTATCACTTCCCGGGAGATTCAGACTGCTGTGC 3587367 Query 725092 GCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 |||| | ||| || ||||| || | |||||| || |||||||| || Sbjct 3587366 GCCTTCTGCTGCCTGGTGAACTAGCTAAGCACGCGGTGTCCGAGGGTAC 3587318 >seq3939 Length=3302458 Score = 86.0 bits (94), Expect = 9e-11 Identities = 105/141 (74%), Gaps = 3/141 (2%) Strand=Plus/Minus Query 1600576 CTCCATCATCTTGCCCATGGTCATGCGCGACGGGATGGCGTGCGGGTTGATCACAATGTC 1600635 ||| || | | |||| ||||||||||| || |||| | |||||||||||| || ||||| Sbjct 1415589 CTCGATGAGCATGCCGATGGTCATGCGGGAGGGGAAGCCGTGCGGGTTGAACAAGATGTC 1415530 Query 1600636 GGGCGTGGCACCGCCGCGAGGCGACCAGGGCATGTCCTCGGTGGAGCGCACGCTGCCCAC 1600695 |||| | || ||||| || ||||||| ||||||| || | || | || || Sbjct 1415529 GGGCAT--CA-TGCCGCTCTCCGCGAAGGGCATATCCTCGGCGGGCCACAGCCGGCTCAG 1415473 Query 1600696 GGTGCCCTTTTGGCCGTGGCG 1600716 | ||||||| ||||||||||| Sbjct 1415472 GATGCCCTTCTGGCCGTGGCG 1415452 >seq3898 Length=2399012 Score = 86.0 bits (94), Expect = 9e-11 Identities = 98/132 (74%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 262915 CATGGCCTGCGCAACTCGTTGCTCGTGGCGCTCATGCCCACGGCCACGACGTCGCAGATC 262974 ||||| |||||||| |||| | || | |||||||||||| | || | |||||| Sbjct 244227 CATGGGGTGCGCAACAGCCTGCTGCTTGCTCCTATGCCCACGGCCTCCACAGCCCAGATC 244286 Query 262975 CTGGGCAACACCGAGGCGTTCGAGGTCATCACGAGCAACATCTACACGCGCCGCGTGCTC 263034 |||||||| | |||| | | ||| | ||| |||||||||||||| ||||| || || Sbjct 244287 CTGGGCAATAACGAGTCCATTGAGCCCTACACCAGCAACATCTACACACGCCGTGTACTG 244346 Query 263035 TCGGGCGACTTT 263046 || ||||| ||| Sbjct 244347 TCTGGCGAGTTT 244358 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177346398592678