Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scleropages_20formosus_20[refseq_20GCF_5F001624265.1_202016-04-20] 4,819 sequences; 777,359,276 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq4299 116 4e-21 seq4004 98.7 1e-15 >seq4299 Length=10599567 Score = 116 bits (128), Expect = 4e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 ||||| ||||| || | ||| ||||| || ||||| ||||| || |||||||||||| Sbjct 10426334 CCTCCCCTGAGACGGAGCACCAGGTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAC 10426275 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | || || || || ||||| ||||| |||| | |||||| || || || Sbjct 10426274 AGGGTGCGGCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGA 10426215 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||||||||| || || ||||| ||| || || | ||||||| | ||| || Sbjct 10426214 ATGCCTTCTTTGTCCTGGATTTTCGCTTTCACGTTCTCAATTGTGTCGCTGGGTTCAACC 10426155 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || ||||| || || || | || || || || || ||||| Sbjct 10426154 TCCAGGGTGATGGTCTTGCCCGTGAGCGTCTTCACAAAGATCTGCAT 10426108 Score = 113 bits (124), Expect = 5e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || ||||| || | ||| ||||| || ||||| ||||| || |||||||||||| Sbjct 10426106 CCCCCCCTGAGACGGAGCACCAGGTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAC 10426047 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | || || || || ||||| ||||| |||| | |||||| || || || Sbjct 10426046 AGGGTGCGGCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGA 10425987 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||||||||| || || ||||| ||| || || | ||||||| | ||| || Sbjct 10425986 ATGCCTTCTTTGTCCTGGATTTTCGCTTTCACGTTCTCAATTGTGTCGCTGGGTTCAACC 10425927 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || ||||| || || || | || || || || || ||||| Sbjct 10425926 TCCAGGGTGATGGTCTTGCCCGTGAGCGTCTTCACAAAGATCTGCAT 10425880 >seq4004 Length=1791360 Score = 98.7 bits (108), Expect = 1e-15 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 134505 ACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCG 134564 |||||||| || || || ||||| || |||||||||||| | |||| | || || Sbjct 83272 ACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCTTCC 83331 Query 134565 AGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGA 134624 ||||| ||||| || || |||| | |||||| || || || |||||||| || || || Sbjct 83332 AGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTGTCCTGG 83391 Query 134625 ATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTA 134684 ||||| ||||| || | ||||| | ||||| || || || ||||| || Sbjct 83392 ATTTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCCACCTCTAGGGTGATGGTCTTG 83451 Query 134685 CCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| | || || ||||| || ||||| Sbjct 83452 CCGGTCAGGGTCTTCACGAAGATCTGCAT 83480 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 ||||| | || || | |||||||| || || || ||||| || |||||||||||| Sbjct 83482 CCTCCACGAAGACGGAGGACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAC 83541 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | || || ||||| ||||| || || |||| | |||||| || || || Sbjct 83542 AGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCAGGGGGA 83601 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 |||||||| || || || ||||| ||||| || | ||||| | ||||| Sbjct 83602 ATGCCTTCCTTGTCCTGGATTTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCCACC 83661 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || ||||| || ||||| | || || ||||| || ||||| Sbjct 83662 TCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 83708 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 ||||| | || || | |||||||| || || || ||||| || |||||||||||| Sbjct 83710 CCTCCACGAAGACGGAGGACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAC 83769 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | || || ||||| ||||| || || |||| | |||||| || || || Sbjct 83770 AGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCAGGGGGA 83829 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 |||||||| || || || ||||| ||||| || | ||||| | ||||| Sbjct 83830 ATGCCTTCCTTGTCCTGGATTTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCCACC 83889 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || ||||| || ||||| | || || ||||| || ||||| Sbjct 83890 TCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 83936 Score = 95.1 bits (104), Expect = 1e-14 Identities = 161/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 ||||| | || || | |||||||| || || || ||||| || |||||||||||| Sbjct 83938 CCTCCACGAAGACGGAGGACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAC 83997 Query 134547 ACGGTG-TGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGG 134605 | |||| | || || ||||| ||||| ||||| |||| | |||||| || || || Sbjct 83998 AGGGTGCCGCCCATCTTC-AGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGG 84056 Query 134606 TATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCAC 134665 |||||||| || || || ||||| ||||| || | ||||| | ||||| Sbjct 84057 AATGCCTTCCTTGTCCTGGATTTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCCAC 84116 Query 134666 GTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTT 134716 || || || ||||| || ||||||| || || || || || ||||| || Sbjct 84117 CTCTAGGGTGATGGTCTTGCCGGTTAGGGTCTTCACAAAGATCTGCATCTT 84167 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505367956063880