Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scleropages_20formosus_20[refseq_20GCF_5F001624265.1_202016-04-20] 4,819 sequences; 777,359,276 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq4702 98.7 1e-15 seq3898 84.2 3e-11 >seq4702 Length=3596321 Score = 98.7 bits (108), Expect = 1e-15 Identities = 96/124 (77%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698 |||||||||| || || | ||| || || ||||||| || ||||| ||||| | ||| | Sbjct 2019927 CCTCATCTCTGCTGATCAGTTCATTGGAGTATGTGAGCCCTGGCATGAGACCCCTCTTCT 2019986 Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758 | ||||| | || || ||||| || |||||||||||||| || || ||||| ||||| | Sbjct 2019987 TCAGCCAGTAGATTGCCGCAAAGGACCCAGAAAAGAAGATTCCCTCCACTGCAGCAAAGG 2020046 Query 39759 CAAC 39762 | || Sbjct 2020047 CTAC 2020050 >seq3898 Length=2399012 Score = 84.2 bits (92), Expect = 3e-11 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 69327 CTCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTTGCTGATTACTCTTTTTGTT 69386 ||||||||||||||| || || || || || ||||| || ||||| || ||||| || Sbjct 243208 CTCTGTACATAGATTGCTGCACTTAATGGTGCCCAGGTTCTGCTGGTTGCTCTTCCGATT 243149 Query 69387 ACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCGAT 69440 ||||| |||||||| || || | || || ||||| || ||||||| ||||| Sbjct 243148 GCAGGCATCCTTGTAGAGCATGTATGGTGTGCCAGTCTCTGTCTGAGACTCGAT 243095 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686867422331160