Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scleropages_20formosus_20[refseq_20GCF_5F001624265.1_202016-04-20] 4,819 sequences; 777,359,276 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq3989 98.7 1e-15 seq3898 93.3 5e-14 >seq3989 Length=9007450 Score = 98.7 bits (108), Expect = 1e-15 Identities = 103/133 (77%), Gaps = 2/133 (2%) Strand=Plus/Minus Query 59980 AACGTCTCATAGCTTTTGCATGC-GTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCT 60038 ||||| | | || ||||| ||| ||||||||||| ||||||||||| || || ||| Sbjct 3293160 AACGTGTAGTGGCCTTTGC-TGCAGTGGAAGGAATTTTCTTCTCTGGGTCATTTGCTGCA 3293102 Query 60039 ATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATT 60098 ||||||||| | |||||| | ||||| ||||| || || | |||||||| ||||| ||| Sbjct 3293101 ATTTTCTGGTTGAAAAAGAGGGGCCTGATGCCTGGTCTCACATTCTCCAATGAGCTCATT 3293042 Query 60099 TCCCGGGACGAGG 60111 | |||| |||| Sbjct 3293041 AGCAGGGATGAGG 3293029 >seq3898 Length=2399012 Score = 93.3 bits (102), Expect = 5e-14 Identities = 81/101 (80%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 19250 TCGAGCTGTTTCCTAGTGGCTATGAAGGATGACAGCATTGAGGGCATCTACGAGACGCTC 19309 || ||||||||||| |||| ||||||||||||||||||||||| ||||| || || || Sbjct 241549 TCCAGCTGTTTCCTGCTGGCCATGAAGGATGACAGCATTGAGGGAATCTATGACACACTG 241608 Query 19310 AAGGAGTGCGCGCACATCTCCAAGTGGTCCGGGGGTATCGG 19350 ||| |||| || | ||| ||||||| |||| || || || Sbjct 241609 AAGCAGTGTGCTCTCATTTCCAAGTCAGCCGGCGGCATTGG 241649 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548491758237360