Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scleropages_20formosus_20[refseq_20GCF_5F001624265.1_202016-04-20] 4,819 sequences; 777,359,276 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq4140 95.1 1e-14 seq3977 86.0 7e-12 >seq4140 Length=4063906 Score = 95.1 bits (104), Expect = 1e-14 Identities = 98/126 (78%), Gaps = 2/126 (2%) Strand=Plus/Plus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 ||||||||||| |||| ||||| ||||||||||| || | || || |||||||| Sbjct 4001713 GTGAAGATGTAACGGGGACTGGCAGCATCCTTGCCGCCATTGATTCGTGTGCCAAACTGG 4001772 Query 152089 CCAGAG-GGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCAC 152147 || ||| |||| |||| ||| | ||||||| |||||| |||||||| || || ||||| Sbjct 4001773 CC-GAGTGGCTGCAGGATGTTCACGTTGTTGCTGCCCACAAAATTCTGTGCTAAGTTCAC 4001831 Query 152148 AATCGT 152153 ||| || Sbjct 4001832 AATTGT 4001837 Score = 82.4 bits (90), Expect = 8e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 ||||| |||||||| | || |||||||||||||| ||| | || || || || || Sbjct 4001713 GTGAAGATGTAACGGGGACTGGCAGCATCCTTGCCGCCATTGATTCGTGTGCCAAACTGG 4001772 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 || |||| || || ||||| ||||||| ||||||||| || || || ||||| ||| Sbjct 4001773 CCGAGTGGCTGCAGGATGTTCACGTTGTTGCTGCCCACAAAATTCTGTGCTAAGTTCACA 4001832 Query 117425 ATCGT 117429 || || Sbjct 4001833 ATTGT 4001837 >seq3977 Length=9255366 Score = 86.0 bits (94), Expect = 7e-12 Identities = 86/112 (77%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 ||||| |||||||| | |||||| | ||| || ||||| ||||| || |||||||| Sbjct 4081904 GTGAAAATGTATCGAGGGCTGGCAGAATCTTTTCCACCATGCAGCCTGGTGCCAAACTGA 4081845 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCA 152140 || | |||| |||||||||||||| || || ||||||||||| |||| Sbjct 4081844 CCCAAAGGCTGTAGGAGGTTGAGGTTATTACTTCCTACGAAATTCTGTGCCA 4081793 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547183037076200