Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scleropages_20formosus_20[refseq_20GCF_5F001624265.1_202016-04-20] 4,819 sequences; 777,359,276 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq4299 168 8e-37 seq4004 167 3e-36 seq3989 95.1 1e-14 seq4140 84.2 2e-11 >seq4299 Length=10599567 Score = 168 bits (186), Expect = 8e-37 Identities = 168/218 (77%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| |||||||| || |||||||| || || || |||||||| | | Sbjct 10425880 ATGCAGATCTTTGTGAAGACGCTCACGGGCAAGACCATCACCCTGGAGGTTGAACCCAGC 10425939 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | |||| || |||| || ||||| |||||||| || || |||||||| |||||| Sbjct 10425940 GACACAATTGAGAACGTGAAAGCGAAAATCCAGGACAAAGAAGGCATTCCTCCTGACCAG 10425999 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || |||||||| |||||||| || |||| || ||||| | ||||| || Sbjct 10426000 CAGAGGCTGATCTTTGCTGGCAAGCAACTGGAAGATGGCCGCACCCTGTCCGACTACAAC 10426059 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCT 27623 |||| ||||| ||||||||||| || || | ||||| Sbjct 10426060 ATCCAGAAGGAGTCCACTCTTCACCTGGTGCTCCGTCT 10426097 Score = 168 bits (186), Expect = 8e-37 Identities = 176/231 (76%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| |||||||| || |||||||| || || || |||||||| | | Sbjct 10426108 ATGCAGATCTTTGTGAAGACGCTCACGGGCAAGACCATCACCCTGGAGGTTGAACCCAGC 10426167 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | |||| || |||| || ||||| |||||||| || || |||||||| |||||| Sbjct 10426168 GACACAATTGAGAACGTGAAAGCGAAAATCCAGGACAAAGAAGGCATTCCTCCTGACCAG 10426227 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || |||||||| |||||||| || |||| || ||||| | ||||| || Sbjct 10426228 CAGAGGCTGATCTTTGCTGGCAAGCAACTGGAAGATGGCCGCACCCTGTCCGACTACAAC 10426287 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACAA 27636 |||| ||||| ||||||||||| || || | ||||| | || || ||| Sbjct 10426288 ATCCAGAAGGAGTCCACTCTTCACCTGGTGCTCCGTCTCAGGGGAGGGCAA 10426338 >seq4004 Length=1791360 Score = 167 bits (184), Expect = 3e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| || ||||||||||| || || || ||||| ||| | || Sbjct 83480 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTAGAGGTGGAGCCCAGT 83421 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| ||| | ||||| ||||| ||||||||||| || ||||| || |||||| Sbjct 83420 GACACCATTGAGAATGTCAAGGCCAAAATCCAGGACAAGGAAGGCATTCCCCCTGACCAG 83361 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || || ||||| ||||| || || |||| || ||||| | ||||| || Sbjct 83360 CAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGGCGCACCCTGTCCGACTACAAC 83301 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| || || || || || ||| | |||||||| || || Sbjct 83300 ATCCAGAAGGAGTCGACCCTCCACCTCGTCCTCCGTCTTCGTGGCGG 83254 Score = 167 bits (184), Expect = 3e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| || ||||||||||| || || || ||||| ||| | || Sbjct 83708 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 83649 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| ||| | ||||| ||||| ||||||||||| || ||||| || |||||| Sbjct 83648 GACACCATTGAGAATGTCAAGGCCAAAATCCAGGACAAGGAAGGCATTCCCCCTGACCAG 83589 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || || ||||| ||||| || || |||| || ||||| | ||||| || Sbjct 83588 CAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGGCGCACCCTGTCCGACTACAAC 83529 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| || || || || || ||| | |||||||| || || Sbjct 83528 ATCCAGAAGGAGTCGACCCTCCACCTCGTCCTCCGTCTTCGTGGAGG 83482 Score = 167 bits (184), Expect = 3e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| || ||||||||||| || || || ||||| ||| | || Sbjct 83936 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 83877 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| ||| | ||||| ||||| ||||||||||| || ||||| || |||||| Sbjct 83876 GACACCATTGAGAATGTCAAGGCCAAAATCCAGGACAAGGAAGGCATTCCCCCTGACCAG 83817 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || || ||||| ||||| || || |||| || ||||| | ||||| || Sbjct 83816 CAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGGCGCACCCTGTCCGACTACAAC 83757 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| || || || || || ||| | |||||||| || || Sbjct 83756 ATCCAGAAGGAGTCGACCCTCCACCTCGTCCTCCGTCTTCGTGGAGG 83710 Score = 165 bits (182), Expect = 9e-36 Identities = 175/228 (77%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| ||||| || ||||||||||| || || || ||||| ||| | || Sbjct 84164 ATGCAGATCTTTGTGAAGACCCTAACCGGCAAGACCATCACCCTAGAGGTGGAGCCCAGT 84105 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| ||| | ||||| ||||| ||||||||||| || ||||| || |||||| Sbjct 84104 GACACCATTGAGAATGTCAAGGCCAAAATCCAGGACAAGGAAGGCATTCCCCCTGACCAG 84045 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATC-GTACCCTAGCAGACTATAA 27584 ||| | || || |||||||| ||||| || || |||| | | ||||| | ||||| || Sbjct 84044 CAGAGGCTGATCTTTGCTGGCAAGCAGCT-GAAGATGGGCGGCACCCTGTCCGACTACAA 83986 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| || || || || || ||| | |||||||| || || Sbjct 83985 CATCCAGAAGGAGTCGACCCTCCACCTCGTCCTCCGTCTTCGTGGAGG 83938 >seq3989 Length=9007450 Score = 95.1 bits (104), Expect = 1e-14 Identities = 78/95 (82%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 64738 GTGGAAGGAATTTTCTTTTCTGGGTCATTCTGTTCTATTTTCTGGCTAAAAAAGCGGGGC 64797 ||||||||||||||||| ||||||||||| | | ||||||||| | |||||| ||||| Sbjct 3293137 GTGGAAGGAATTTTCTTCTCTGGGTCATTTGCTGCAATTTTCTGGTTGAAAAAGAGGGGC 3293078 Query 64798 CTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGAT 64832 |||||||| ||||| | || || || ||||| || Sbjct 3293077 CTGATGCCTGGTCTCACATTCTCCAATGAGCTCAT 3293043 >seq4140 Length=4063906 Score = 84.2 bits (92), Expect = 2e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 32125 ACCATTGTCAACCTTGCTCAGAACTTTGTCGGTGCAAATAACCTGAACTTACTCGAGCCA 32184 || ||||| ||| | || ||||| ||||| || || ||| ||||| | || ||||| Sbjct 4001837 ACAATTGTGAACTTAGCACAGAATTTTGTGGGCAGCAACAACGTGAACATCCTGCAGCCA 4001778 Query 32185 TCTGGACAGTTTGGGACCCGGCTCGCCGGTGGCAAGGATGCTGCGAGCTCCCGTTACATC 32244 || |||||||| || || || || |||||||||||||| || ||||||||||| Sbjct 4001777 CTCGGCCAGTTTGGCACACGAATCAATGGCGGCAAGGATGCTGCCAGTCCCCGTTACATC 4001718 Query 32245 TTCACC 32250 |||||| Sbjct 4001717 TTCACC 4001712 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570276045927280