Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scleropages_20formosus_20[refseq_20GCF_5F001624265.1_202016-04-20] 4,819 sequences; 777,359,276 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq4343 163 2e-35 seq4462 86.0 5e-12 >seq4343 Length=2653754 Score = 163 bits (180), Expect = 2e-35 Identities = 135/165 (82%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 29942 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 30001 ||||| | | ||| || |||||||| ||||| || | ||||||||||||||| |||||| Sbjct 516818 AGCCCTGCAATGTGGGCAATCATGTAGGTGAGCAGGGCGTAGCTGGCGATGTTGAAGGGT 516877 Query 30002 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 30061 || ||||| |||||||| |||||| |||||| ||||| || || ||||| ||||||||| Sbjct 516878 ACGCCGAGGCCCATGTCTGCCGACCGCTGGTACAGCTGGCAGGACAGCTCCCCGTCGCTC 516937 Query 30062 ACGTAAAACTGACACATGGCGTGGCACGGAGGAAGAGCCATGAGG 30106 ||||| ||||| |||| |||||||| || || | |||||| ||| Sbjct 516938 ACGTAGAACTGGCACAGAGCGTGGCAGGGGGGCAAAGCCATCAGG 516982 Score = 136 bits (150), Expect = 3e-27 Identities = 139/180 (77%), Gaps = 1/180 (1%) Strand=Plus/Plus Query 30223 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30282 |||||| |||| |||||||| || || | ||||||||| ||||| || || |||||||| Sbjct 518034 CATGTCTTTGTATTCTGCTCCAAAGTGGCGCCACTGGAAACCGTAGACAGGCCCCAGGTC 518093 Query 30283 TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 30342 ||||| || ||| | ||| || ||||||||| || || | || || ||||| || Sbjct 518094 ACCCTCCTCTCTGGACGTGAACCCATTCTTGTCCAGGAATTCACGAGACCCATTGGCATC 518153 Query 30343 CCAGATCTTTACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCA 30402 ||||||||| || ||||||||||| ||||| |||| || ||||| || ||| |||| || Sbjct 518154 CCAGATCTTGACGCCCTTCTCAGAAAGCTCCTTGGCATTGGTGGAGCC-CTGCCGAAGCA 518212 >seq4462 Length=3044790 Score = 86.0 bits (94), Expect = 5e-12 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 110409 CCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGGATGGAGAA 110468 ||||||||| || | ||| |||||||| ||| ||||| ||| || || |||||||| Sbjct 429069 CCTGCTGAGCACAATGTTGATCCTGTCGGGCAGGGGTCTGTTCGACTCTGGAATGGAGAA 429010 Query 110469 CCAAGTCTTTCTACCCATTATCACCACGTTCT 110500 ||| ||||||| |||||| |||||||| |||| Sbjct 429009 CCACGTCTTTCGACCCATGATCACCACATTCT 428978 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406286536755348