Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scleropages_20formosus_20[refseq_20GCF_5F001624265.1_202016-04-20] 4,819 sequences; 777,359,276 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq4299 123 2e-23 seq4004 123 2e-23 >seq4299 Length=10599567 Score = 123 bits (136), Expect = 2e-23 Identities = 166/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| ||||| || || || || |||||| | || || || || || ||||| Sbjct 10425879 CATGCAGATCTTTGTGAAGACGCTCACGGGCAAGACCATCACCCTGGAGGTTGAACCCAG 10425938 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 |||| | ||||||| || ||| ||||| || |||||||||||||| || || || || Sbjct 10425939 CGACACAATTGAGAACGTGAAAGCGAAAATCCAGGACAAAGAAGGCATTCCTCCTGACCA 10425998 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||| | | || | || ||||| ||| ||||||| | ||| | ||||| ||||| Sbjct 10425999 GCAGAGGCTGATCTTTGCTGGCAAGCAACTGGAAGATGGCCGCACCCTGTCCGACTACAA 10426058 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| || |||||||| || | || |||| | ||| | |||| ||||| Sbjct 10426059 CATCCAGAAGGAGTCCACTCTTCACCTGGTGCTCCGTCTCAGGGGGGGCAT 10426109 Score = 118 bits (130), Expect = 9e-22 Identities = 145/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| ||||| || || || || |||||| | || || || || || ||||| Sbjct 10426107 CATGCAGATCTTTGTGAAGACGCTCACGGGCAAGACCATCACCCTGGAGGTTGAACCCAG 10426166 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 |||| | ||||||| || ||| ||||| || |||||||||||||| || || || || Sbjct 10426167 CGACACAATTGAGAACGTGAAAGCGAAAATCCAGGACAAAGAAGGCATTCCTCCTGACCA 10426226 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||| | | || | || ||||| ||| ||||||| | ||| | ||||| ||||| Sbjct 10426227 GCAGAGGCTGATCTTTGCTGGCAAGCAACTGGAAGATGGCCGCACCCTGTCCGACTACAA 10426286 Query 27167 CATTCAAAAGGAGTCGAC 27184 ||| || |||||||| || Sbjct 10426287 CATCCAGAAGGAGTCCAC 10426304 >seq4004 Length=1791360 Score = 123 bits (136), Expect = 2e-23 Identities = 166/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || || || |||||||||||| | || || || || ||||| || Sbjct 83709 CATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAG 83650 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | ||||||| ||||| ||||| || ||||| |||||||| || || || || Sbjct 83649 TGACACCATTGAGAATGTCAAGGCCAAAATCCAGGACAAGGAAGGCATTCCCCCTGACCA 83590 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||| | | || | ||| ||||| || ||||||| | ||| | ||||| ||||| Sbjct 83589 GCAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGGCGCACCCTGTCCGACTACAA 83530 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| || |||||||||||| | || | || | ||| | || || ||||| Sbjct 83529 CATCCAGAAGGAGTCGACCCTCCACCTCGTCCTCCGTCTTCGTGGAGGCAT 83479 Score = 123 bits (136), Expect = 2e-23 Identities = 166/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || || || |||||||||||| | || || || || ||||| || Sbjct 83937 CATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAG 83878 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | ||||||| ||||| ||||| || ||||| |||||||| || || || || Sbjct 83877 TGACACCATTGAGAATGTCAAGGCCAAAATCCAGGACAAGGAAGGCATTCCCCCTGACCA 83818 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||| | | || | ||| ||||| || ||||||| | ||| | ||||| ||||| Sbjct 83817 GCAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGGCGCACCCTGTCCGACTACAA 83758 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| || |||||||||||| | || | || | ||| | || || ||||| Sbjct 83757 CATCCAGAAGGAGTCGACCCTCCACCTCGTCCTCCGTCTTCGTGGAGGCAT 83707 Score = 122 bits (134), Expect = 8e-23 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || || || |||||||||||| | || || || || ||||| || Sbjct 83481 CATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTAGAGGTGGAGCCCAG 83422 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | ||||||| ||||| ||||| || ||||| |||||||| || || || || Sbjct 83421 TGACACCATTGAGAATGTCAAGGCCAAAATCCAGGACAAGGAAGGCATTCCCCCTGACCA 83362 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||| | | || | ||| ||||| || ||||||| | ||| | ||||| ||||| Sbjct 83361 GCAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGGCGCACCCTGTCCGACTACAA 83302 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCA 27216 ||| || |||||||||||| | || | || | ||| | || || |||| Sbjct 83301 CATCCAGAAGGAGTCGACCCTCCACCTCGTCCTCCGTCTTCGTGGCGGCA 83252 Score = 107 bits (118), Expect = 2e-18 Identities = 164/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || || ||||||||| | || || || || ||||| || Sbjct 84164 ATGCAGATCTTTGTGAAGACCCTAACCGGCAAGACCATCACCCTAGAGGTGGAGCCCAGT 84105 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||||| ||||| ||||| || ||||| |||||||| || || || || Sbjct 84104 GACACCATTGAGAATGTCAAGGCCAAAATCCAGGACAAGGAAGGCATTCCCCCTGACCAG 84045 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCG-ACCGTTTCCGATTACAA 27166 ||| | | || | || ||||| || || |||| | | ||| | ||||| ||||| Sbjct 84044 CAGAGGCTGATCTTTGCTGGCAAGCAGCTG-AAGATGGGCGGCACCCTGTCCGACTACAA 83986 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| || |||||||||||| | || | || | ||| | || || ||||| Sbjct 83985 CATCCAGAAGGAGTCGACCCTCCACCTCGTCCTCCGTCTTCGTGGAGGCAT 83935 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434892201602880