Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scleropages_20formosus_20[refseq_20GCF_5F001624265.1_202016-04-20] 4,819 sequences; 777,359,276 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq4343 136 4e-27 >seq4343 Length=2653754 Score = 136 bits (150), Expect = 4e-27 Identities = 129/162 (80%), Gaps = 2/162 (1%) Strand=Plus/Plus Query 6620 TGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCC 6679 || || |||||||| |||||||| ||||| || || |||||||| || || || | ||| Sbjct 516830 TGGGCAATCATGTAGGTGAGCAGGGCGTAGCTGGCGATGTTGAAGGGTACGCCGAGGCCC 516889 Query 6680 ATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGC-GACGTAGAATTG 6738 |||||| |||| || || || |||||||||||||||||||| |||| |||||||| || Sbjct 516890 ATGTCTGCCGACCGCTGGTACAGCTGGCAGGACAGCTCCCC-GTCGCTCACGTAGAACTG 516948 Query 6739 GCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATC 6780 ||| || | |||||| ||||| | |||||||| || || || Sbjct 516949 GCACAGAGCGTGGCAGGGGGGCAAAGCCATCAGGGGAAGGTC 516990 Score = 136 bits (150), Expect = 4e-27 Identities = 129/162 (80%), Gaps = 2/162 (1%) Strand=Plus/Minus Query 34565 GATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTC-GCGAA 34623 || || || |||||||| | ||||| |||||| | || ||||| |||||||| |||| Sbjct 516990 GACCTTCCCCTGATGGCTTTGCCCCCCTGCCACGCTCTGTGCCAGTTCTACGTGAGCGAC 516931 Query 34624 TGGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTT 34683 |||||||||||||||||||| || || || |||| ||||||||| | || || || || Sbjct 516930 -GGGGAGCTGTCCTGCCAGCTGTACCAGCGGTCGGCAGACATGGGCCTCGGCGTACCCTT 516872 Query 34684 CAACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCA 34725 |||||| || || ||||| |||||||| |||||||| || || Sbjct 516871 CAACATCGCCAGCTACGCCCTGCTCACCTACATGATTGCCCA 516830 Score = 111 bits (122), Expect = 1e-19 Identities = 117/154 (76%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 6899 TACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCC 6958 || || || |||||||| | ||||||||| |||||||| || |||| ||| |||||||| Sbjct 518044 TATTCTGCTCCAAAGTGGCGCCACTGGAAACCGTAGACAGGCCCCAGGTCACCCTCCTCT 518103 Query 6959 CGAGATGGGAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTC 7018 | || | |||||| ||||||||| || || |||||||| | || ||||||||||| Sbjct 518104 CTGGACGTGAACCCATTCTTGTCCAGGAATTCACGAGACCCATTGGCATCCCAGATCTTG 518163 Query 7019 ACCCCCCGGGACGAGAGCTCCTTGGTGTTCGTGG 7052 || ||| || |||||||||| || |||| Sbjct 518164 ACGCCCTTCTCAGAAAGCTCCTTGGCATTGGTGG 518197 Score = 111 bits (122), Expect = 1e-19 Identities = 117/154 (76%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 34293 CCACGAACACCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGACGCTCACGGGTCTC 34352 |||| || |||||||||| || ||| || ||||||||||| || | ||||||| Sbjct 518197 CCACCAATGCCAAGGAGCTTTCTGAGAAGGGCGTCAAGATCTGGGATGCCAATGGGTCTC 518138 Query 34353 GAGACTTTCTGGACAAGCGGGGGTTCCCATCTCGGGAGGAGGGCGACTTGGGCCCGGTCT 34412 | || || ||||||||| |||||| | || | |||||||| ||| |||| || |||| Sbjct 518137 GTGAATTCCTGGACAAGAATGGGTTCACGTCCAGAGAGGAGGGTGACCTGGGGCCTGTCT 518078 Query 34413 ACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTA 34446 |||| ||||||||| | |||||||| || || || Sbjct 518077 ACGGTTTCCAGTGGCGCCACTTTGGAGCAGAATA 518044 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448235397793680