Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scleropages_20formosus_20[refseq_20GCF_5F001624265.1_202016-04-20] 4,819 sequences; 777,359,276 total letters Query= NC_029255.1 Length=129563 Score E Sequences producing significant alignments: (Bits) Value seq4343 86.0 5e-12 seq3886 82.4 6e-11 >seq4343 Length=2653754 Score = 86.0 bits (94), Expect = 5e-12 Identities = 88/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 118534 AGCCCTGTCAGGTGAGCAATCATGTATGTCAACAAACTGTAGCTGGCTACATTAAAAGGA 118593 ||||||| | ||| ||||||||||| || | || ||||||||| | || || || Sbjct 516818 AGCCCTGCAATGTGGGCAATCATGTAGGTGAGCAGGGCGTAGCTGGCGATGTTGAAGGGT 516877 Query 118594 ACACCCAGACCCATGTCTGCTGATCTCTGGTACAATTGGCAAGAGAGCTCCCCGT 118648 || || || ||||||||||| || | |||||||| ||||| || |||||||||| Sbjct 516878 ACGCCGAGGCCCATGTCTGCCGACCGCTGGTACAGCTGGCAGGACAGCTCCCCGT 516932 >seq3886 Length=1936090 Score = 82.4 bits (90), Expect = 6e-11 Identities = 130/184 (71%), Gaps = 2/184 (1%) Strand=Plus/Minus Query 3251 GATGAGCTCTTCCGAGATGGGGTAAACTGGGGGCGCATTGTTGCTTTCTTTGAGTTTGGT 3310 || ||||||||| | || || || |||||||||||||| || || || || ||||| || Sbjct 730363 GAGGAGCTCTTCAGCGACGGCGTGAACTGGGGGCGCATCGTGGCCTTTTTCGAGTTCGGG 730304 Query 3311 GGTGTTATGTGTGTGGAAAGCGTCAATAGAGGCATACCCTCCCTCGTTGACAACATTGC- 3369 || ||||| ||||| ||||| || | | || | |||| || || |||||||| Sbjct 730303 GGCACCATGTGCGTGGAGAGCGTGAACCGGGAGATGACGTCCCAGGTGGATAACATTGCG 730244 Query 3370 CGCGTGGATGACAGACCAGCTGGGTGGAGAGGTTGGTTTGTGGATCCAAGAGAACGGAGG 3429 ||| |||||||| || | || ||| | || |||||||| || || ||||| Sbjct 730243 CGC-TGGATGACGGAGTATCTAAACGGACCCCTCCGTAACTGGATCCAGGAAAATGGAGG 730185 Query 3430 ATGG 3433 |||| Sbjct 730184 ATGG 730181 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414452457129916