Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scleropages_20formosus_20[refseq_20GCF_5F001624265.1_202016-04-20] 4,819 sequences; 777,359,276 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq4343 147 2e-30 seq4462 82.4 6e-11 >seq4343 Length=2653754 Score = 147 bits (162), Expect = 2e-30 Identities = 131/164 (80%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 29714 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGC 29773 ||||| | | ||| || |||||||| ||||| || | ||||||||||||||| ||||| Sbjct 516818 AGCCCTGCAATGTGGGCAATCATGTAGGTGAGCAGGGCGTAGCTGGCGATGTTGAAGGGT 516877 Query 29774 ACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTC 29833 || ||||| |||||||| | |||| |||||| |||||||| || ||||| ||||||||| Sbjct 516878 ACGCCGAGGCCCATGTCTGCCGACCGCTGGTACAGCTGGCAGGACAGCTCCCCGTCGCTC 516937 Query 29834 ACGTAAAACTGACACATGGCATGGCACGGAGGAAGGGCCATGAG 29877 ||||| ||||| |||| || ||||| || || | ||||| || Sbjct 516938 ACGTAGAACTGGCACAGAGCGTGGCAGGGGGGCAAAGCCATCAG 516981 Score = 111 bits (122), Expect = 1e-19 Identities = 120/158 (76%), Gaps = 1/158 (1%) Strand=Plus/Plus Query 30017 AAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAG 30076 || || | ||||||||| ||||| || || |||||||| ||||| || ||| | ||| Sbjct 518056 AAGTGGCGCCACTGGAAACCGTAGACAGGCCCCAGGTCACCCTCCTCTCTGGACGTGAAC 518115 Query 30077 CCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCG 30136 || ||||||||| || || | || || ||||| ||||||||||| || |||||||| Sbjct 518116 CCATTCTTGTCCAGGAATTCACGAGACCCATTGGCATCCCAGATCTTGACGCCCTTCTCA 518175 Query 30137 GAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCA 30174 || ||||| |||| || ||||| || ||| |||| || Sbjct 518176 GAAAGCTCCTTGGCATTGGTGGAGCC-CTGCCGAAGCA 518212 >seq4462 Length=3044790 Score = 82.4 bits (90), Expect = 6e-11 Identities = 78/100 (78%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 114292 CCTGCTGAGGACTACGTTTAGCCTGTCTCTCAGAGGTCTATTCTTTTCGGGGATGGAGAA 114351 ||||||||| || | ||| | |||||| ||| ||||| ||| || || |||||||| Sbjct 429069 CCTGCTGAGCACAATGTTGATCCTGTCGGGCAGGGGTCTGTTCGACTCTGGAATGGAGAA 429010 Query 114352 CCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTACCT 114391 ||| ||||||| |||||| |||||||| |||| ||||| Sbjct 429009 CCACGTCTTTCGACCCATGATCACCACATTCTCTCTACCT 428970 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406139345400634