Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scleropages_20formosus_20[refseq_20GCF_5F001624265.1_202016-04-20] 4,819 sequences; 777,359,276 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq4004 134 3e-26 seq4299 122 2e-22 >seq4004 Length=1791360 Score = 134 bits (148), Expect = 3e-26 Identities = 160/216 (74%), Gaps = 6/216 (3%) Strand=Plus/Plus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 |||||| || || || || ||||| || ||||||||||| |||| | || | |||||| Sbjct 83268 GAGGACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATC 83327 Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011 ||| || || || |||||||| |||||||||||||| | | || |||||||| || Sbjct 83328 TTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTGTC 83387 Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAAT 152068 || ||||| |||||| |||| | | |||| ||| ||| || || || || || Sbjct 83388 CTGGATTTTGGCCTTGACATTCTCAATGGTGTC---ACTGGGCTCCACCTCTAGGGTGAT 83444 Query 152069 AGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || ||||| || || ||||||||||||| |||||| Sbjct 83445 GGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 83480 Score = 134 bits (148), Expect = 3e-26 Identities = 160/216 (74%), Gaps = 6/216 (3%) Strand=Plus/Plus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 |||||| || || || || ||||| || ||||||||||| |||| | || | |||||| Sbjct 83496 GAGGACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATC 83555 Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011 ||| || || || |||||||| |||||||||||||| | | || |||||||| || Sbjct 83556 TTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTGTC 83615 Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAAT 152068 || ||||| |||||| |||| | | |||| ||| ||| || || || || || Sbjct 83616 CTGGATTTTGGCCTTGACATTCTCAATGGTGTC---ACTGGGCTCCACCTCCAGGGTGAT 83672 Query 152069 AGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || ||||| || || ||||||||||||| |||||| Sbjct 83673 GGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 83708 Score = 134 bits (148), Expect = 3e-26 Identities = 160/216 (74%), Gaps = 6/216 (3%) Strand=Plus/Plus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 |||||| || || || || ||||| || ||||||||||| |||| | || | |||||| Sbjct 83724 GAGGACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATC 83783 Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011 ||| || || || |||||||| |||||||||||||| | | || |||||||| || Sbjct 83784 TTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTGTC 83843 Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAAT 152068 || ||||| |||||| |||| | | |||| ||| ||| || || || || || Sbjct 83844 CTGGATTTTGGCCTTGACATTCTCAATGGTGTC---ACTGGGCTCCACCTCCAGGGTGAT 83900 Query 152069 AGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || ||||| || || ||||||||||||| |||||| Sbjct 83901 GGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 83936 Score = 116 bits (128), Expect = 9e-21 Identities = 160/220 (73%), Gaps = 8/220 (4%) Strand=Plus/Plus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT-CCCAT 151950 |||||| || || || || ||||| || ||||||||||| |||| | || | ||||| Sbjct 83952 GAGGACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCCGCCCAT 84011 Query 151951 CTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTT 152010 |||| || || || || ||||| |||||||||||||| | | || |||||||| | Sbjct 84012 CTTC-AGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTGT 84070 Query 152011 CTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAA 152067 | || ||||| |||||| |||| | | |||| ||| ||| || || || || | Sbjct 84071 CCTGGATTTTGGCCTTGACATTCTCAATGGTGTC---ACTGGGCTCCACCTCTAGGGTGA 84127 Query 152068 TAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 | || ||||| || || |||||||| |||| |||||| || Sbjct 84128 TGGTCTTGCCGGTTAGGGTCTTCACAAAGATCTGCATCTT 84167 >seq4299 Length=10599567 Score = 122 bits (134), Expect = 2e-22 Identities = 160/222 (72%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 151883 CCTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT 151942 |||||| | ||| || || |||||||| ||||| || ||||||||||| |||| | || Sbjct 10426101 CCTGAGACGGAGCACCAGGTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGT 10426042 Query 151943 TCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCC 152002 | |||||||| || || || || ||||| |||||||||||||| | | || || Sbjct 10426041 GCGGCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGAATGCC 10425982 Query 152003 TTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAG 152062 ||| || || || ||||| ||| || |||| | |||| || || || || Sbjct 10425981 TTCTTTGTCCTGGATTTTCGCTTTCACGTTCTCAATTGTGTCGCTGGGTTCAACCTCCAG 10425922 Query 152063 AGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || ||||||||||| |||||||| |||| |||||| Sbjct 10425921 GGTGATGGTCTTGCCCGTGAGCGTCTTCACAAAGATCTGCAT 10425880 Score = 122 bits (134), Expect = 2e-22 Identities = 160/222 (72%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 151883 CCTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT 151942 |||||| | ||| || || |||||||| ||||| || ||||||||||| |||| | || Sbjct 10426329 CCTGAGACGGAGCACCAGGTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGT 10426270 Query 151943 TCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCC 152002 | |||||||| || || || || ||||| |||||||||||||| | | || || Sbjct 10426269 GCGGCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGAATGCC 10426210 Query 152003 TTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAG 152062 ||| || || || ||||| ||| || |||| | |||| || || || || Sbjct 10426209 TTCTTTGTCCTGGATTTTCGCTTTCACGTTCTCAATTGTGTCGCTGGGTTCAACCTCCAG 10426150 Query 152063 AGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || ||||||||||| |||||||| |||| |||||| Sbjct 10426149 GGTGATGGTCTTGCCCGTGAGCGTCTTCACAAAGATCTGCAT 10426108 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153749559137549