Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scleropages_20formosus_20[refseq_20GCF_5F001624265.1_202016-04-20] 4,819 sequences; 777,359,276 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq4257 127 3e-24 seq4247 127 3e-24 seq3887 98.7 1e-15 >seq4257 Length=10342467 Score = 127 bits (140), Expect = 3e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 9244 ATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCTTGTTTCAGA 9303 ||||| | ||||||||||| | |||| ||| ||| | ||||| || || ||||| Sbjct 3853217 ATGAGCCTCGTGGTCTGGAAAATGCGCTCATCATCCCAGCCGGGATGCTCCTGCTTCAGC 3853158 Query 9304 ACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCCCAGGT 9363 ||||| || || | ||||| |||| |||||||| ||||| |||||||| || || || Sbjct 3853157 ACATCACAGACTCGATTGTGCTCCCGCAGCCAGATTGTGGCATACATCATAAGTCCTGGG 3853098 Query 9364 ACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACTTCGGGAGGA 9423 ||||||||||| || || ||||| || || | ||| | || || || | |||||| Sbjct 3853097 ACCAGGCCAAAGGCTTCATGACCCACTGCAAAACGGTGCTCCTCAGGAACATGAGGAGGA 3853038 Query 9424 TAGATCATGTGCACCTGGACGTCTTTGACCGAGGGGGGATACATTTCACC 9473 ||| ||| | ||| ||||| || || || | || ||||| || || || Sbjct 3853037 TAGTGCATCTCCACTTGGACATCCTTTACTGTTGGAGGATAAATCTCCCC 3852988 Score = 109 bits (120), Expect = 8e-19 Identities = 160/224 (71%), Gaps = 2/224 (1%) Strand=Plus/Minus Query 8363 AACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGTTC 8422 ||||| || | || ||||||||||| |||||||| ||| | || ||||| || | || Sbjct 3854499 AACCCGACATTCCCACCGAAGGTGCTTGGCTTCCAATACTCTGGAGAGCATATAGCATTT 3854440 Query 8423 GCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGATG 8482 |||| || ||||| || || | ||||| |||| || | ||| |||| || |||||| Sbjct 3854439 CCCATCAGTCCTTTCAGTGAATAGGGAGCTCCCATTTCTACCATGGTCTCTCCAAAGATG 3854380 Query 8483 GCGTTGGGACGGGGCTTTTCCACCAAGAA-TCCGGTGTACAGCTCCACAGCCTCGACGTC 8541 |||||||| | ||||| |||| |||||| || | |||||||||| || || | || Sbjct 3854379 GCGTTGGGTCTTGGCTTCTCCA-CAAGAAGACCAGGATACAGCTCCATCGCATCAATATC 3854321 Query 8542 TCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTG 8585 ||||| | || || || | || |||| || ||||||| Sbjct 3854320 GCCGTATAATTCCTCTAGCTCCGATGCCATCTTTTTATCTCCTG 3854277 Score = 98.7 bits (108), Expect = 1e-15 Identities = 119/162 (73%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 9908 TCACCTTTGACCCCAACAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCG 9967 |||||| || || | ||| ||||| ||||| | || || ||||| || | |||| | Sbjct 3852122 TCACCTGCAACTCCCATAGGTGTTGGGCAATCCTTGGGCACTGGAGGAAGGGTTCTTGTG 3852063 Query 9968 TAATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTATATG 10027 ||||||||||| || || | |||||||||||| ||| | || || | |||| || | Sbjct 3852062 TAATAGGAGAGGTTCGAATACGCTTCCCAGCTTTTGTAACCATAATCTGAGTTGAATGTA 3852003 Query 10028 GGAGGGCTGTCAATCAAATCGGATCTACCTGAGCCAGCAAAA 10069 |||||||| || ||||||| ||||| ||| | || ||||| Sbjct 3852002 GGAGGGCTATCTATCAAATGAGATCTGGCTGTGGCATCAAAA 3851961 >seq4247 Length=11832447 Score = 127 bits (140), Expect = 3e-24 Identities = 172/240 (72%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 8345 GCGCTCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCC 8404 || || ||||| ||| | || ||||| | || || |||||||| ||| |||| || | Sbjct 297135 GCACTGTTGACTATCTCAAAGCCCACTTTGCCCCCAAAGGTGCTCGGCATCCAATATTCT 297076 Query 8405 GGGGAGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGA 8464 || ||||| ||| ||| ||||||| ||||| ||||| || |||||||||| || | Sbjct 297075 GGAGAGCATATGGGGTTTCCCATGAGTCCTTTAAGGGAAAAAGGAGCCCCCATTTCAACC 297016 Query 8465 ATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGC 8524 ||| | || || || || || ||||| | ||||| ||||||| || ||| | ||||||| Sbjct 297015 ATGGTTTCCCCAAAAATTGCATTGGGCCTTGGCTTCTCCACCAGGAGTCCAGGGTACAGC 296956 Query 8525 TCCACAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCT 8584 ||||| | || | || || || | | || || || || |||||||| |||||| Sbjct 296955 TCCACTGAGTCTATGTGGCCATACATCTTCTCCAGCTCTGCTGCCATCTCCTTCTCTCCT 296896 Score = 109 bits (120), Expect = 8e-19 Identities = 166/234 (71%), Gaps = 2/234 (1%) Strand=Plus/Minus Query 9243 GATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCTTGTTTCAG 9302 ||| || || | ||||||||| | |||| ||| ||| | || || || | || Sbjct 295453 GATAAGACGGGCGGTCTGGAAGATGCGCTCATCATCCCAGTTGGGGTGCTCGCGACGCAT 295394 Query 9303 AACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCCCAGG 9362 | || || || | |||||| || | | |||||||||||| ||||||||||| ||||| Sbjct 295393 GATGTCACAGACGCGGTTGTGCTCTCGCAACCAGATAGTGGCATACATCATGAGTCCAGG 295334 Query 9363 TACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATG-TTTTCGGGCACTTCGGGAG 9421 ||||| |||||||| || || || ||||||| || || | || ||||| | || | Sbjct 295333 GACCAGACCAAAAGCTTCATGGCCCACAGCCA-ACTGGTGCTCCTCAGGCACATAAGGTG 295275 Query 9422 GATAGATCATGTGCACCTGGACGTCTTTGACCGAGGGGGGATACATTTCACCGT 9475 | || | ||||||||| ||| | || |||||| || || |||| ||||||| Sbjct 295274 GGTACAACATGTGCACTTGGGCCTCCCTGACCGTTGGTGGGTACACCTCACCGT 295221 Score = 93.3 bits (102), Expect = 6e-14 Identities = 116/159 (73%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 9649 TCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAA 9708 |||||| |||||||| ||| | || ||||| ||||| ||| | || || | | || Sbjct 294756 TCTTACTCCATGTCCAAGTGCCTTGGTGAACGCCGGTCCTTTAGACATGTCCGATTTGAA 294697 Query 9709 AAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATC 9768 ||||||||| |||||||| ||| | || ||||||||||| || |||| || || ||||| Sbjct 294696 AAACTGGTGTGTGAAATGCTGGGCGAAGAAGGCAAACATCAAACTGGTTCCTTGTGGATC 294637 Query 9769 GGGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAAC 9807 || |||| | ||| || ||| ||| ||||| || Sbjct 294636 TGGGATGAATCTTTTCCTCAGCAGAACTTTCTCCACCAC 294598 Score = 91.5 bits (100), Expect = 2e-13 Identities = 126/174 (72%), Gaps = 2/174 (1%) Strand=Plus/Minus Query 9064 AATGCATCCGGCATGAGAGAATGCCAGTGATACAACATGTTAAACTCGGAAAATATACGA 9123 ||||| || ||||| || | ||||||||| |||| | |||| ||||| || ||||| Sbjct 296194 AATGCGTCAGGCATCAGCGGATGCCAGTGGTACAGCGTGTTGAACTCAGATGCAATACGG 296135 Query 9124 TTTTGGTACTGGAA-CGAAGTACCAAAGAGCAGTTCGGGCTTAAACAGCAGCTGAAAATG 9182 || ||||||||||| || | | || ||||| || || | ||| ||||| || || Sbjct 296134 TTCTGGTACTGGAAGCGCTG-GCTGAAAAGCAGCTCCGGGTCGAACTTCAGCTTGAAGTG 296076 Query 9183 GTAGCCGCTGAGCTGCTGAACGTATTGCGTCACGATAATGTTGATGGTTTCCCC 9236 ||||||||| || ||||| ||||| | | | || ||| || ||||| || || Sbjct 296075 GTAGCCGCTCAGATGCTGCACGTAGTCCTCAATGACAATCTTAATGGTCTCACC 296022 >seq3887 Length=12445687 Score = 98.7 bits (108), Expect = 1e-15 Identities = 141/199 (71%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 8352 TGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGC 8411 ||||||| | ||||| | || || ||||||||||||||||||||| | || |||| Sbjct 11492635 TGACGATGTCAAACCCTGTTTGACCACCAAAGGTGCTGGGCTTCCAGTACTCTGGAGAGC 11492576 Query 8412 AGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCT 8471 ||||| ||| ||| ||| ||||| | ||| || || | ||| | ||| | || |||| Sbjct 11492575 AGATGGGGTTTCCCAAGAGCCCTTTCAAGGAAAAAGGTGACCCGATCTCCACCATACTCT 11492516 Query 8472 CACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACAG 8531 ||| || ||||||||||| || | ||| || | || | | | | ||| | ||| | | Sbjct 11492515 GACCAAATATGGCGTTGGGGCGCGCCTTCTCAAGCAGCATTGCAGGGTAGAACTCTAAGG 11492456 Query 8532 CCTCGACGTCTCCGTAAAG 8550 | || | ||||| || || Sbjct 11492455 CATCAATATCTCCATAGAG 11492437 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716833617133760