Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scleropages_20formosus_20[refseq_20GCF_5F001624265.1_202016-04-20] 4,819 sequences; 777,359,276 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq4004 152 5e-32 >seq4004 Length=1791360 Score = 152 bits (168), Expect = 5e-32 Identities = 171/229 (75%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 |||||| || ||||| | || || || || || ||||||||| ||||| |||||||| Sbjct 83253 GCCGCCACGAAGACGGAGGACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGA 83312 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 ||||||||| | || || ||||||||||| ||||| ||||| | ||| ||||| | ||| Sbjct 83313 CAGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCAGGGGG 83372 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCAC 41814 || || ||||||||| |||||| ||| | | | ||||| || | |||||| Sbjct 83373 AATGCCTTCCTTGTCCTGGATTTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCCAC 83432 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 ||| | || || || || || ||||| ||||| ||||| ||||||||| Sbjct 83433 CTCTAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATG 83481 Score = 152 bits (168), Expect = 5e-32 Identities = 171/229 (75%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || ||||| | || || || || || ||||||||| ||||| |||||||| Sbjct 83481 GCCTCCACGAAGACGGAGGACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGA 83540 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 ||||||||| | || || ||||||||||| ||||| ||||| | ||| ||||| | ||| Sbjct 83541 CAGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCAGGGGG 83600 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCAC 41814 || || ||||||||| |||||| ||| | | | ||||| || | |||||| Sbjct 83601 AATGCCTTCCTTGTCCTGGATTTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCCAC 83660 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 ||||| || || || || || ||||| ||||| ||||| ||||||||| Sbjct 83661 CTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATG 83709 Score = 152 bits (168), Expect = 5e-32 Identities = 171/229 (75%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || ||||| | || || || || || ||||||||| ||||| |||||||| Sbjct 83709 GCCTCCACGAAGACGGAGGACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGA 83768 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 ||||||||| | || || ||||||||||| ||||| ||||| | ||| ||||| | ||| Sbjct 83769 CAGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCAGGGGG 83828 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCAC 41814 || || ||||||||| |||||| ||| | | | ||||| || | |||||| Sbjct 83829 AATGCCTTCCTTGTCCTGGATTTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCCAC 83888 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 ||||| || || || || || ||||| ||||| ||||| ||||||||| Sbjct 83889 CTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATG 83937 Score = 123 bits (136), Expect = 2e-23 Identities = 168/232 (72%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || ||||| | || || || || || ||||||||| ||||| |||||||| Sbjct 83937 GCCTCCACGAAGACGGAGGACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGA 83996 Query 41695 GAGGGTGC-GCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGG 41753 ||||||| || | || || ||||||||||| || || ||||| | ||| ||||| | || Sbjct 83997 CAGGGTGCCGCCCATCTTC-AGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGG 84055 Query 41754 GAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCA 41813 ||| || ||||||||| |||||| ||| | | | ||||| || | ||||| Sbjct 84056 GAATGCCTTCCTTGTCCTGGATTTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCCA 84115 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 |||| | || || || || || || || ||||| || || |||||||| || Sbjct 84116 CCTCTAGGGTGATGGTCTTGCCGGTTAGGGTCTTCACAAAGATCTGCATCTT 84167 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462276151962800