Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20aleutianus_20[genbank_20GCA_5F001910805.1_202016-12-20] 10,489 sequences; 899,650,391 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq1897 98.7 1e-15 seq4546 95.1 1e-14 >seq1897 Length=119533 Score = 98.7 bits (108), Expect = 1e-15 Identities = 102/128 (80%), Gaps = 5/128 (4%) Strand=Plus/Minus Query 116685 AGGTGGACCTGTCCAAGGACACG-AGCGACTGGGAGCGCT-TGAACGACAACGAGCGCCA 116742 ||||||| |||||||||||| | ||| ||||||| | || |||| ||| ||||| | Sbjct 864 AGGTGGATCTGTCCAAGGACCTGCAGC-ACTGGGA-CTCTCTGAAGGACGACGAGAGGTT 807 Query 116743 TTTCATCAAGCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCT 116802 |||||| || ||| |||| || || ||||||||||||||||||||||| ||||| || Sbjct 806 CTTCATCTCTCATGTGTTGGCGTTCTTTGCCGCCAGCGACGGCATCGTCAAYGAGAACCT 747 Query 116803 GGTCGAGC 116810 ||| |||| Sbjct 746 GGT-GAGC 740 >seq4546 Length=26461 Score = 95.1 bits (104), Expect = 1e-14 Identities = 94/122 (77%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 117032 GGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCC 117091 || ||||| | ||||| || ||||| || |||||| ||||||| || ||| ||||| Sbjct 23568 GGGGAGCGAATTGTGGCTTTTGCGGCAGTGGAGGGCATCTTCTTCTCCGGCTCATTCGCT 23509 Query 117092 GCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTC 117151 ||||| |||||||||||||| | || || ||||| ||||| || | | ||||||||| Sbjct 23508 GCCATCTTTTGGCTCAAGAAGAGAGGACTAATGCCTGGCCTTACCTACTCCAACGAGCTG 23449 Query 117152 AT 117153 || Sbjct 23448 AT 23447 Score = 91.5 bits (100), Expect = 2e-13 Identities = 85/108 (79%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 116583 TGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGACATGTGGC 116642 |||| || || |||||| | ||||| || | |||||||| || ||||||||||| ||| Sbjct 25848 TGCTCCGAGAAAACCCCAGACGGTTTGTCGTCTTCCCCATCCAGTACCCGGACATCTGGA 25789 Query 116643 GCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGG 116690 | |||||||| |||| |||| || | |||||| || |||||||||| Sbjct 25788 GGATGTACAAGCAGGCACAGGCTTCTTACTGGACGGTGGAGGAGGTGG 25741 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515151648322640