Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20aleutianus_20[genbank_20GCA_5F001910805.1_202016-12-20] 10,489 sequences; 899,650,391 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq3303 136 3e-27 seq1 84.2 2e-11 >seq3303 Length=47767 Score = 136 bits (150), Expect = 3e-27 Identities = 491/757 (65%), Gaps = 24/757 (3%) Strand=Plus/Plus Query 133207 CTTTGACGAGATACTGGTTGACCACTTGAAACTCGCCGGCGAGAACGCGTCTGAGATATA 133266 |||||| |||| ||||||| | |||||||| |||| ||| || | | | || | Sbjct 41281 CTTTGAGCAGATGAGGGTTGACGATCTGAAACTCTCCGGAGAGGACCCTGCGGGTGTAGA 41340 Query 133267 CATTCGACGTGAACGGTTCGAAAGATTCGTTGTTGCCGAGTATCTGCGCCGTCGTCGCCG 133326 || ||| | | ||||| || ||||||||||| || ||||| || || | |||| Sbjct 41341 TGTTGCTGGTGTAGGCTTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCG 41400 Query 133327 TGGGCATGTACGCCACCAACAAAGAGTTTCTTACGCCGTACTTGTTTATGTTGCACTGCA 133386 ||||||| |||| || || ||| || ||||||| || || || || || Sbjct 41401 TGGGCATCGGGGCCAGCAGCAGGCTGTTCCTCACGCCGTGGATGGCGATCTTCTCCTTCA 41460 Query 133387 ATTCGTTCCAGTCCCACAGATTGTTGGAATGATAGACGCCGTTCTCGTCGTCGTAGTTGT 133446 ||||||||| ||| | | ||| || |||| || || | ||| Sbjct 41461 GCAGCTTCCAGTCCAGCAGTTCGGTGG----------GC--TTCT--TC-TCCCACATGT 41505 Query 133447 GAAAATGCAAAATACCCCTGCTCACCGGACTGTCCGTGTACGATTCATAGGGTCCGTTGA 133506 | |||| || ||| |||| || ||| | | | ||||| || ||||| ||| Sbjct 41506 CGTACTGCAGGATGCCCTTGCTGACGGGAGAGCCTGCGTACGTCTCGTAGGGGCCGAGCT 41565 Query 133507 TTTTGGCCAGCTCGCAGCTAGCCTCCAAAGCGGCAAAGTAAATGGTTTCCGCGATT-GAA 133565 ||||||||||||||| ||||||| ||||| ||| |||| || |||| ||| Sbjct 41566 CGGCGGCCAGCTCGCAGCTCGCCTCCAGGGCGGCGTGGTAGATGGCCTCGAAGATTTGAA 41625 Query 133566 TAGTTGACGAACCTG-GCATCGTCGCTATCGTAGGCGATGTCG-AGAAGAACAAACGCGT 133623 || || | | | ||| || || | ||| ||| | | | | || | || | || || | Sbjct 41626 TA-TTCA-GCAGCTGAGCCTCTTTGCTTTCGAACGGG-TAACGCATGAGGATGAAGGCAT 41682 Query 133624 CGGCCAAACCCTGTATGCCGACGCCGATGGGTCGATGTTTTTTATTGCTCCTCTCCGACT 133683 | |||||||| || | ||| | || || || | || || ||| | | |||| | Sbjct 41683 CCGCCAAACCTTGGACGCCAATTCCAATCGGCCTGTGGCGCTTGTTGGACTTTTCCGCTT 41742 Query 133684 CGGCCGTGGGATAGTGGTTGACGTCGATGATCTTGTTGAGATTGCGGACGATAATTTTAG 133743 ||| | ||||||| ||| | ||||||| |||||| | ||| |||||| | ||| | Sbjct 41743 CGGGCACTGGATAGTAGTTAATTTCGATGACCTTGTTCAAATTCTTGACGATTACTTTGG 41802 Query 133744 TCAAATGTTTCAGCAAAACATAGTCAAATGTCTTGGCGTCGACGTCGACGCACTTGTTGA 133803 ||| | | ||| | ||||||| ||| || || || |||| || |||||| Sbjct 41803 TCACAGATGCCAGTTTTTTAAAGTCAAAAGTCC--GCTCCGGGGT-GACGTACATGTTGA 41859 Query 133804 CGGCAATACTGGCTAGATTACAAACGGCCGTCTCGTTCTCGTCGCAATACTGGACGATCT 133863 ||||| ||| |||||||| || || ||| | | | | |||| | || | Sbjct 41860 GCGCAATTGAGGCCAGATTACACACCGCTACCTCATCGTGGCTGGTGTACTCRATAATTT 41919 Query 133864 CGGCGCAGAGGTTGCTGCATTTGATGGTGCCCAAAtttttttGATTGCTAAAGTTATTGC 133923 | | ||||||||||||| | ||||||||||||| ||| | ||| ||||| | |||| Sbjct 41920 CTGTGCAGAGGTTGCTGGACTTGATGGTGCCCAGATTCTGTTGGTTGCTCTTCCTGTTGC 41979 Query 133924 AATGATCCTTGTATAGCATGTACGGCCCGCCGGTTTC 133960 | || ||||| |||||||| ||| ||| ||||| Sbjct 41980 AGGCGTCTTTGTACAGCATGTATGGCGTGCCAGTTTC 42016 >seq1 Length=4870262 Score = 84.2 bits (92), Expect = 2e-11 Identities = 85/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 133851 TACTGGACGATCTCGGCGCAGAGGTTGCTGCATTTGATGGTGCCCAAAtttttttGATTG 133910 |||| |||||||| | ||| || |||||| ||||||||||||||| ||| | || ||| Sbjct 4202899 TACTCTACGATCTCCGTGCACAGATTGCTGGATTTGATGGTGCCCAGATTCTGCTGGTTG 4202958 Query 133911 CTAAAGTTATTGCAATGATCCTTGTATAGCATGTACGGCCCGCCGGTTTCG 133961 || | ||||| |||||||| |||||||| ||| |||||||||| Sbjct 4202959 CTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTATGGCGTGCCGGTTTCG 4203009 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433774941426388