Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20aleutianus_20[genbank_20GCA_5F001910805.1_202016-12-20] 10,489 sequences; 899,650,391 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq134 96.9 4e-15 seq4351 91.5 2e-13 seq3587 89.7 6e-13 seq53 89.7 6e-13 >seq134 Length=769775 Score = 96.9 bits (106), Expect = 4e-15 Identities = 67/75 (89%), Gaps = 1/75 (1%) Strand=Plus/Plus Query 60063 TTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCA 60122 || |||| || ||||||||||||||| |||||||||||||| |||| || |||||||||| Sbjct 260770 TTACTCCCCGTCAGGGAATCGAACCCCGGTCTCCCGCGTGAAAGGC-GAAATACTCACCA 260828 Query 60123 CTATACTACCGAGGA 60137 |||||||| |||||| Sbjct 260829 CTATACTAACGAGGA 260843 >seq4351 Length=11629 Score = 91.5 bits (100), Expect = 2e-13 Identities = 70/82 (85%), Gaps = 2/82 (2%) Strand=Plus/Plus Query 60056 GAAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATA 60115 ||||||| |||| || | ||||||||||||| ||||| |||||||||||||||| ||| Sbjct 10939 GAAAAATA--CTCCCCGTCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATA 10996 Query 60116 CTCACCACTATACTACCGAGGA 60137 || ||||||||||| |||||| Sbjct 10997 CTGTCCACTATACTAACGAGGA 11018 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||| |||||||||||||||| ||||| |||||| Sbjct 3404 CTCCCCGTCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTGTCCACTA 3345 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 3344 TACTAACGAGGA 3333 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||| |||||||||||||||| ||||| |||||| Sbjct 6678 CTCCCCGTCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTGTCCACTA 6619 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 6618 TACTAACGAGGA 6607 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||| |||||||||||||||| ||||| |||||| Sbjct 7815 CTCCCCGTCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTGTCCACTA 7756 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 7755 TACTAACGAGGA 7744 >seq3587 Length=24376 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||| |||||||||||||||| ||||| |||||| Sbjct 700 CTCCCCGTCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTGTCCACTA 759 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 760 TACTAACGAGGA 771 >seq53 Length=1273183 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||| |||||||||||||||| ||||| |||||| Sbjct 1213281 CTCCCCGTCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTGTCCACTA 1213340 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 1213341 TACTAACGAGGA 1213352 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571742627564920