Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20aleutianus_20[genbank_20GCA_5F001910805.1_202016-12-20] 10,489 sequences; 899,650,391 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq3303 333 2e-86 seq1 123 2e-23 >seq3303 Length=47767 Score = 333 bits (368), Expect = 2e-86 Identities = 737/1102 (67%), Gaps = 21/1102 (2%) Strand=Plus/Plus Query 22409 TCGTTCCACAAACCGATGGCGGTCAAATCTTTGACCAGATGACGGTTCACCACTTGAAAC 22468 ||| |||||| || | | |||| ||||||| ||||||| |||| || | |||||| Sbjct 41253 TCGCTCCACAGCCCTCTCTCCGTCAGGTCTTTGAGCAGATGAGGGTTGACGATCTGAAAC 41312 Query 22469 TCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCGAAAGATTCATTG 22528 || ||||| | ||| | ||| ||| |||||| ||| | | ||||| || || ||| Sbjct 41313 TCTCCGGAGAGGACCCTGCGGGTGTAGATGTTGCTGGTGTAGGCTTCGATGGACTCGTTG 41372 Query 22529 TTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGTAGCGAGTTTCTC 22588 || ||||| ||||| ||||| || || || |||||||| |||| ||| || ||| ||| Sbjct 41373 TTGCCCAGGATCTGGGCGGTGGAGGCCGTGGGCATCGGGGCCAGCAGCAGGCTGTTCCTC 41432 Query 22589 AAGCCGTGCTTTGAAATTTTACTCTTGAGCATCGACCAGTCCCACAGATCGGACGGCGTC 22648 | |||||| | | || || ||| |||| | ||||||| ||| |||| ||| || Sbjct 41433 ACGCCGTGGATGGCGATCTTCTCCTTCAGCAGCTTCCAGTCCAGCAGTTCGGTGGGCTTC 41492 Query 22649 ACATTGTCCCACATATCGTATTGCAACACGCCGCGACTCGCCGGGCTGCCTTCGTACGTT 22708 || |||||||| ||||| |||| | ||| || | || |||| ||||||| Sbjct 41493 ---TTCTCCCACATGTCGTACTGCAGGATGCCCTTGCTGACGGGAGAGCCTGCGTACGTC 41549 Query 22709 TCGTACGGACCATATATCG-CGGCAAGTTCGCAGCTCGCCTCCAACGCGCCGTAATATAT 22767 ||||| || || | ||| |||| || |||||||||||||||| ||| ||| || || Sbjct 41550 TCGTAGGGGCCG-AGCTCGGCGGCCAGCTCGCAGCTCGCCTCCAGGGCGGCGTGGTAGAT 41608 Query 22768 AGTCTCGAAGATTTTCTTGTTCAATTCGGCGGCGGCGAC-----GCTTTCGTACGGCATA 22822 | ||||||||||| | |||| || || | | | ||||||| |||| | Sbjct 41609 GGCCTCGAAGATTTGAAT-----ATTCAGCAGCTGAGCCTCTTTGCTTTCGAACGGGTAA 41663 Query 22823 CGCATCATCACGAACGCGTCCGCCATACCCTGAACGCCTATACCGATCGGTCGGTTTTTC 22882 ||||| | | ||| || ||||||| ||| || ||||| || || ||||| | || | Sbjct 41664 CGCATGAGGATGAAGGCATCCGCCAAACCTTGGACGCCAATTCCAATCGGCCTGTGGCGC 41723 Query 22883 AGATTCGACACTTTTGCCTCGGGCAAAGGATACCAATTCGAATCGATTGTTCTGTTCAAG 22942 || ||| || || ||||||| ||||| | || ||||| ||||||| Sbjct 41724 TTGTTGGACTTTTCCGCTTCGGGCACTGGATAGTAGTTAATTTCGATGACCTTGTTCAAA 41783 Query 22943 TTTCTGGTCACAATTTTCGTTATNNNNNNNNNNNNNTCAAAGTCGTAAACGCCCGAT--T 23000 || || | | ||| || | | |||||| ||| | ||| | Sbjct 41784 TTCTTGACGATTACTTTGGTCACAGATGCCAGTTTTTTAAAGTC--AAAAGTCCGCTCCG 41841 Query 23001 GTACAACAAACTTGTTGACGGCGATCGAGGCAAGATTGCATACGGCCACCTCGTCTTTGG 23060 | || || |||||| || || ||||| ||||| || || || ||||| || | | Sbjct 41842 GGGTGACGTACATGTTGAGCGCAATTGAGGCCAGATTACACACCGCTACCTCATCGTGGC 41901 Query 23061 ACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTGCCCAAATTGCTCT 23120 |||||||| | |||||| || || || ||||| |||| || ||||||| ||| | Sbjct 41902 TGGTGTACTCRATAATTTCTGTGCAGAGGTTGCTGGACTTGATGGTGCCCAGATTCTGTT 41961 Query 23121 GGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCT 23180 ||||||| || | ||||| | || ||||| |||||||| |||||||| || || || Sbjct 41962 GGTTGCTCTTCCTGTTGCAGGCGTCTTTGTACAGCATGTATGGCGTGCCAGTTTCTGTCT 42021 Query 23181 GCGACTCGATGATCGCTCGCCACATAGTCTGAG-CGTGAACACGTCGCACGTACCTGCCT 23239 | |||||||| | || |||||| ||||| | | | |||| ||| | || | || Sbjct 42022 GGGACTCGATAACGGCGTGCCACAACTGCTGAGCCTTCACCACG-CGCTTGAACTTCCCC 42080 Query 23240 TCTTCCTCGTACTTTTGGTACAACGCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCCG 23299 | | ||| || ||| | | || || || | || | || ||| |||| || Sbjct 42081 TGCTTCTCATAGGAGGTGTAGAGCTTTTCGAACTCCTCCCCCCAGCACTCGTCCAGCCCT 42140 Query 23300 GGCGATTGCATCGGACACATGAGACTCCACATTGAGTCATTTTCAACGCGTCTCATAAAA 23359 || | | | |||||||| ||| ||| || | || || | |||| || Sbjct 42141 GGGCACTCGTTGGGACACATCAGAGACCAGTCCTCGTTGCTCTCCACTCTCTTCATGAAC 42200 Query 23360 AGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTG 23419 || || || ||||| || ||||||| || || | ||| | | |||||| || |||||| Sbjct 42201 AGGTCGGGRATCCACAGGCCGTAGAAAAGGTCCCTGGCTCTCTGCTCCTCCTTTCCGGTG 42260 Query 23420 TTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCA 23479 ||||| || | |||| ||||| |||||||| || ||||| ||||| ||||| | ||| Sbjct 42261 TTCTTCTTTAGCTCCAGGAAGTCAAACACGTCGGCGTGCCAGGGCTCCAGGTACATGGCG 42320 Query 23480 AACGCGCCCGGTCTCTTATTGC 23501 || || || |||||||| |||| Sbjct 42321 AAGGCTCCTGGTCTCTTGTTGC 42342 >seq1 Length=4870262 Score = 123 bits (136), Expect = 2e-23 Identities = 122/158 (77%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 23047 CACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGT 23106 |||||| ||||| ||||||||||| || || || || |||||||| | || || || Sbjct 4202880 CACCTCATCTTTACTTGTGTACTCTACGATCTCCGTGCACAGATTGCTGGATTTGATGGT 4202939 Query 23107 GCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGT 23166 ||||| ||| ||||||||| || | ||||| | ||||||||||||||||| ||||| Sbjct 4202940 GCCCAGATTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTATGGCGT 4202999 Query 23167 GCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACA 23204 ||| || ||| |||||| |||||||| || ||||| Sbjct 4203000 GCCGGTTTCGGTCTGCGATTCGATGATGGCGTACCACA 4203037 Score = 123 bits (136), Expect = 2e-23 Identities = 121/156 (78%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 23340 TTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGC 23399 |||| || ||| ||||||| || || || ||||| | ||| | ||||| || | ||| | Sbjct 4203409 TTTCCACTCGTTTCATAAACAGGTCTGGGATCCACATGGCGAAAAACAGGTCTCTGGCCC 4203468 Query 23400 GCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCC 23459 | ||||||||| ||||||||||| ||||| ||||| ||||| ||||| || ||||| Sbjct 4203469 TCTGCTCCTCTTTACCGGTGTTCTTCTTCAACTCCAAGAAGTCAAACACATCGAAATGCC 4203528 Query 23460 ACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCT 23495 ||||||| ||||| || || || || || ||||||| Sbjct 4203529 ACGGCTCCAGGTACACAGCGAAGGCCCCGGGTCTCT 4203564 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445707954452880