Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20aleutianus_20[genbank_20GCA_5F001910805.1_202016-12-20] 10,489 sequences; 899,650,391 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq3303 221 2e-52 >seq3303 Length=47767 Score = 221 bits (244), Expect = 2e-52 Identities = 718/1107 (65%), Gaps = 17/1107 (2%) Strand=Plus/Plus Query 62325 TTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGGTTA 62384 ||||| ||||| || |||| | |||||| || | || | || ||||| ||||| Sbjct 41241 TTCTTCATCTCCTCGCTCCACAGCCCTCTCTCCGTCAGGTCTTTGAGCAGATGAGGGTTG 41300 Query 62385 ACTACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCC 62444 || | || || ||||| || | || || || ||||| || || ||||| || | ||| Sbjct 41301 ACGATCTGAAACTCTCCGGAGAGGACCCTGCGGGTGTAGATGTTGCTGGTGTAGGCTTCG 41360 Query 62445 ACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAAT 62504 | ||||| || || |||| || || || || || || || ||||| || |||| || Sbjct 41361 ATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTGGGCATCGGGGCCAGCAGC 41420 Query 62505 AAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGATGTTCCCAATTCCAAAGA 62564 | || || || | |||| | ||| || || || || | | ||| | | || Sbjct 41421 AGGCTGTTCCTCACGCCGTGGATGGCGATCTTCTCCTTCAGCAGCTTCCAGTCCAGCAGT 41480 Query 62565 TCCGACGG-TACAACANNNNNNNNNNNATATTGTAGAATACCGTTACTGGCGTACGATCC 62623 || | || | | | || || || || || || ||| || || || Sbjct 41481 TCGGTGGGCTTCTTCTCCCACATGTCG-TACTGCAGGATGCCCTTGCTGACGGGAGAGCC 41539 Query 62624 TACATATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAATGCACC 62683 | | || || || || || || || | || || | || |||||||| | || | Sbjct 41540 TGCGTACGTCTCGTAGGGGCCGAGCTCGGCGGCCAGCTCGCAGCTCGCCTCCAGGGCGGC 41599 Query 62684 GTAATAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCAAATGG 62743 || || |||| || ||||| | |||| || || || || ||| || || || Sbjct 41600 GTGGTAGATGGCCTCGAAGATTTGAATATTCAGCAGCTGAGCCTCTTTGCTTTCGAACGG 41659 Query 62744 ATAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATG 62803 ||| | ||| || || || ||||| || ||||| || ||||| || || || || || Sbjct 41660 GTAACGCATGAGGATGAAGGCATCCGCCAAACCTTGGACGCCAATTCCAATCGGCCTGTG 41719 Query 62804 TCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATT 62863 | ||| || || |||| ||||| || | ||||| || ||||| || || | || || Sbjct 41720 GCGCTTGTTGGACTTTTCCGCTTCGGGCACTGGATAGTAGTTAATTTCGATGACCTTGTT 41779 Query 62864 GAGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCCCATC 62923 | ||| |||| ||||||||| |||| |||||| ||| ||||| || || Sbjct 41780 CAAATTCTTGACGATTACTTTGGTCACAGATGCCAGTTTTTTAAAGTCAAAAGTCCGCTC 41839 Query 62924 TA---TTACAAACATGTTCAATGCAACAGATGCCAGATTACACACGGCTACCTCAT--TA 62978 | || ||||||| | |||| || |||||||||||||| |||||||||| | Sbjct 41840 CGGGGTGACGTACATGTTGAGCGCAATTGAGGCCAGATTACACACCGCTACCTCATCGTG 41899 Query 62979 GCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTT 63038 || | || | || || || ||||| || || || ||||||| || || | ||| Sbjct 41900 GC--TGGTGTACTCRATAATTTCTGTGCAGAGGTTGCTGGACTTGATGGTGCCCAGATTC 41957 Query 63039 TGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCA 63098 ||||| || ||||| |||| || || || || || || ||| |||| || |||||||| Sbjct 41958 TGTTGGTTGCTCTTCCTGTTGCAGGCGTCTTTGTACAGCATGTATGGCGTGCCAGTTTCT 42017 Query 63099 ATCTGAGATTCTATAATCGCTTTCCA-GACGACTCGAGCCTTTATTATAGATTTGTATCT 63157 |||| || || |||| || | ||| || || ||||||| | | ||| | | Sbjct 42018 GTCTGGGACTCGATAACGGCGTGCCACAACTGCT-GAGCCTTCACCACGCGCTTGAACTT 42076 Query 63158 CCTTTCTCTTTCGTATAG--AGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCC 63215 || || ||| |||| || || | ||||||||| || ||||| | |||| Sbjct 42077 CC--CCTGCTTCTCATAGGAGGTGTAGAGCTTTTCGAACTCCTCCCCCCAGCACTCGTCC 42134 Query 63216 AATCTAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTC 63275 | | || || || | |||||||||| ||||| || ||| || ||||| ||| Sbjct 42135 AGCCCTGGGCACTCGTTGGGACACATCAGAGACCAGTCCTCGTTGCTCTCCACTCTCTTC 42194 Query 63276 ATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTTGTTCTATGTTCCTCGTT 63334 || || || || || ||||| || || || || || || || | ||| || ||||| || Sbjct 42195 ATGAACAGGTCGGGRATCCACAG-GCCGTAGAAAAGGTCCCTGGCTCTCTGCTCCTCCTT 42253 Query 63335 TCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTA 63394 ||| || ||||| || || || ||||| | | | || | ||||| || |||| ||| Sbjct 42254 TCCGGTGTTCTTCTTTAGCTCCAGGAAGTCAAACACGTCGGCGTGCCAGGGCTCCAGGTA 42313 Query 63395 TATGGCCATAACTCCAGGCCGTTTGTT 63421 ||||| | |||| || | ||||| Sbjct 42314 CATGGCGAAGGCTCCTGGTCTCTTGTT 42340 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629735023039920