Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20aleutianus_20[genbank_20GCA_5F001910805.1_202016-12-20] 10,489 sequences; 899,650,391 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq3303 260 2e-64 seq1 84.2 3e-11 >seq3303 Length=47767 Score = 260 bits (288), Expect = 2e-64 Identities = 736/1111 (66%), Gaps = 25/1111 (2%) Strand=Plus/Plus Query 78997 TTCTTGATCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTA 79056 ||||| ||||| || |||| | |||||| || | || | || ||||| || || Sbjct 41241 TTCTTCATCTCCTCGCTCCACAGCCCTCTCTCCGTCAGGTCTTTGAGCAGATGAGGGTTG 41300 Query 79057 ACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCC 79116 || | ||||| ||||| || | || || || ||||| || || ||||| || | ||| Sbjct 41301 ACGATCTGAAACTCTCCGGAGAGGACCCTGCGGGTGTAGATGTTGCTGGTGTAGGCTTCG 41360 Query 79117 ACCGATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAAT 79176 | || || || || |||| || || || || || ||||| ||||| || |||| || Sbjct 41361 ATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTGGGCATCGGGGCCAGCAGC 41420 Query 79177 AAACTATTTCTAAGACCGTATGATCT-GATTTTATCTTTTAG-AGATTCCCAATCCCAAA 79234 | || || || | |||| ||| ||| || || || || || |||| | ||| | Sbjct 41421 AGGCTGTTCCTCACGCCGTG-GATGGCGATCTTCTCCTTCAGCAGCTTCC-AGTCCAGCA 41478 Query 79235 GATCAGACGGGACAACATTCCAAAGATCATATTGTAGAATACCGTTACTAGCGTATGATC 79294 | || | || | ||| | || || || || || || || || || || | Sbjct 41479 GTTCGGTGGGCTTCTTCTCCCACATGTCGTACTGCAGGATGCCCTTGCTGACGGGAGAGC 41538 Query 79295 CTGTGTATGTTTCATAAGGTCCTTCCTTTTCGGCTAATTCACAACTCGCCTCTAATGCTC 79354 ||| ||| || || || || || || |||| | || || |||||||| | || Sbjct 41539 CTGCGTACGTCTCGTAGGGGCCGAGCTCGGCGGCCAGCTCGCAGCTCGCCTCCAGGGCGG 41598 Query 79355 CGTAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGGCTATCAAATG 79414 ||| || |||| ||||| || | |||| || || || ||| ||| || || | Sbjct 41599 CGTGGTAGATGGCCTCGAAGATTTGAATATTCAGCAGCTGAGCCTCTTTGCTTTCGAACG 41658 Query 79415 GATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTAT 79474 | ||| | ||| || || || || || || ||||| || ||||| || || || || | Sbjct 41659 GGTAACGCATGAGGATGAAGGCATCCGCCAAACCTTGGACGCCAATTCCAATCGGCCTGT 41718 Query 79475 GTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTAT 79534 | | ||| || || |||| ||||| || | ||||| || ||||| || || | || | Sbjct 41719 GGCGCTTGTTGGACTTTTCCGCTTCGGGCACTGGATAGTAGTTAATTTCGATGACCTTGT 41778 Query 79535 TGAGATTCCTGACTATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAATCGTCCA- 79593 | | |||| |||| ||||||||| |||| ||||| ||| ||||| |||| Sbjct 41779 TCAAATTCTTGACGATTACTTTGGTCACAGATGCCAGTTTTTTAAAGTCAAAA-GTCCGC 41837 Query 79594 TCTA---TTACAAACATGTTCAACGCGACAGATGCCAGATTACAAACGGCTACCTCAT-- 79648 || | || ||||||| | ||| | || ||||||||||| || |||||||||| Sbjct 41838 TCCGGGGTGACGTACATGTTGAGCGCAATTGAGGCCAGATTACACACCGCTACCTCATCG 41897 Query 79649 TAGCATCCGCATATTGTATTATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTAAAT 79708 | || | || | || ||||| ||||||||||| || |||| ||||| || | || Sbjct 41898 TGGCTGGTG--TACTCRATAATTTCTGTGCAGAGGTTGCTGGACTTGATGGTGCCCAGAT 41955 Query 79709 TTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAACGGAGTACCAGTTT 79768 | ||||| || ||||| |||| || || || || || || ||| | || || ||||||| Sbjct 41956 TCTGTTGGTTGCTCTTCCTGTTGCAGGCGTCTTTGTACAGCATGTATGGCGTGCCAGTTT 42015 Query 79769 CAATCTGAGATTCTATAATCGCTTTCCA-GACGACTCGAGCCTTTATTATAGACTTGTA- 79826 | |||| || || |||| || | ||| || || ||||||| | | |||| | Sbjct 42016 CTGTCTGGGACTCGATAACGGCGTGCCACAACTGCT-GAGCCTTCACCACGCGCTTGAAC 42074 Query 79827 -TCTCTT--TTCTCTTTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAACATC 79883 || | | ||||| | | ||||| | | ||||||||| || ||||| || Sbjct 42075 TTCCCCTGCTTCTCATAGG--AGGTGTAGAGCTT--TTCGAACTCCTCCCCCCAGCACTC 42130 Query 79884 GTCTAATCCAGGACATTCGTCAGGACACATCAACGACCACTCTCCATCATCCTTTACTCG 79943 ||| | || || || |||| |||||||||| ||||| || | | || |||| Sbjct 42131 GTCCAGCCCTGGGCACTCGTTGGGACACATCAGAGACCAGTCCTCGTTGCTCTCCACTCT 42190 Query 79944 TTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGCTCCT 80002 ||||| || || || || ||||| || || || || || || |||| ||| ||||||| Sbjct 42191 CTTCATGAACAGGTCGGGRATCCACAG-GCCGTAGAAAAGGTCCCTGGCTCTCTGCTCCT 42249 Query 80003 CGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCA 80062 | ||||| || ||||| || || || ||||| | | | || | ||||| || |||| Sbjct 42250 CCTTTCCGGTGTTCTTCTTTAGCTCCAGGAAGTCAAACACGTCGGCGTGCCAGGGCTCCA 42309 Query 80063 AGTATATGGCCATAACTCCCGGTCGTTTGTT 80093 ||| ||||| | |||| |||| ||||| Sbjct 42310 GGTACATGGCGAAGGCTCCTGGTCTCTTGTT 42340 >seq1 Length=4870262 Score = 84.2 bits (92), Expect = 3e-11 Identities = 118/166 (71%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 80678 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAAAA 80737 |||| || | ||| || || || ||||||||||| || || || || | || || | | Sbjct 4205994 CACTGAACACTTTCTTGGTCTCTTTGTGTAGATTAGACACAGCAATCCGTGCAGCCAGGA 4206053 Query 80738 TGGCATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 80797 ||||| || || |||| || || |||||||| | || |||||||||||||||| Sbjct 4206054 GAGCATAGTCAGGGTGTTTGGTGGTGAGGGTGGCTGCGGTCTCTGCTGCCAGAGTGTCCA 4206113 Query 80798 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 80843 || || || || || ||| | || | || ||||| |||||||| Sbjct 4206114 GCTCCACGGTGGTGACCCCACTGTACAGACCCTGGATCACCTTCAT 4206159 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718174625981960