Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20aleutianus_20[genbank_20GCA_5F001910805.1_202016-12-20] 10,489 sequences; 899,650,391 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq3303 232 9e-56 seq4546 96.9 5e-15 seq1 93.3 6e-14 >seq3303 Length=47767 Score = 232 bits (256), Expect = 9e-56 Identities = 730/1114 (66%), Gaps = 31/1114 (3%) Strand=Plus/Plus Query 71080 TTTTTGATCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTA 71139 || || ||||| || |||| | |||||| || | || | || |||||||| || Sbjct 41241 TTCTTCATCTCCTCGCTCCACAGCCCTCTCTCCGTCAGGTCTTTGAGCAGATGAGGGTTG 41300 Query 71140 ACTACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCC 71199 || | ||||| ||||| || | || || || ||||| || || ||||| || | ||| Sbjct 41301 ACGATCTGAAACTCTCCGGAGAGGACCCTGCGGGTGTAGATGTTGCTGGTGTAGGCTTCG 41360 Query 71200 ACTGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAAT 71259 | ||||| || || |||| || || || || || || || ||||| || |||| || Sbjct 41361 ATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTGGGCATCGGGGCCAGCAGC 41420 Query 71260 AGACTATTTCTAAGACCATGTGATCG-GATTTTATCTTTTAG-AGATTCCCAATTCCAAA 71317 || || || || | || || ||| | ||| || || || || || |||| | |||| Sbjct 41421 AGGCTGTTCCTCACGCCGTG-GATGGCGATCTTCTCCTTCAGCAGCTTCC--AGTCCAGC 41477 Query 71318 GATCCGATGG--TACAACNNNNNNNNNNNNNNNNNNNNNNATGCCGTTACTAGCGTATGA 71375 | || ||| | | | ||||| || || || || Sbjct 41478 AGTTCGGTGGGCTTCTTCTCCCACATGTCGTACTGCAGG-ATGCCCTTGCTGACGGGAGA 41536 Query 71376 TCCTGCATATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAATGC 71435 ||||| || || ||||| || || | |||| || || || |||||||| | || Sbjct 41537 GCCTGCGTACGTCTCGTAGGGGCCGAGCTCGGCGGCCAGCTCGCAGCTCGCCTCCAGGGC 41596 Query 71436 TCCATAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCAAA 71495 | | || |||| ||||| || | |||| || || || || ||| || || Sbjct 41597 GGCGTGGTAGATGGCCTCGAAGATTTGAATATTCAGCAGCTGAGCCTCTTTGCTTTCGAA 41656 Query 71496 TGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGTCT 71555 || ||| | ||| || || || || || || ||||| |||||||| || || || || Sbjct 41657 CGGGTAACGCATGAGGATGAAGGCATCCGCCAAACCTTGGACGCCAATTCCAATCGGCCT 41716 Query 71556 GTGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTT 71615 ||| | ||| || || |||| ||||| || | ||||| || ||||| || || | || Sbjct 41717 GTGGCGCTTGTTGGACTTTTCCGCTTCGGGCACTGGATAGTAGTTAATTTCGATGACCTT 41776 Query 71616 ATTGAGATTTCTGACTATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAATCTCCC 71675 || | ||| |||| ||||||||| |||| ||||| ||| ||||| ||| Sbjct 41777 GTTCAAATTCTTGACGATTACTTTGGTCACAGATGCCAGTTTTTTAAAGTCAAAAGTCCG 41836 Query 71676 ATCTA---TTACAAACACGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTCAT- 71731 || | || ||| ||| | |||| || ||||||||||| || |||||||||| Sbjct 41837 CTCCGGGGTGACGTACATGTTGAGCGCAATTGAGGCCAGATTACACACCGCTACCTCATC 41896 Query 71732 -TAGCATCGGCATATTGTATAATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAA 71790 | || || || | |||||||| ||||| || || || |||||||||| || | | Sbjct 41897 GTGGC--TGGTGTACTCRATAATTTCTGTGCAGAGGTTGCTGGACTTGATGGTGCCCAGA 41954 Query 71791 TTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATAAACGGAGTACCAGTT 71850 || ||||| || ||||| |||| || || || || || || || | || || |||||| Sbjct 41955 TTCTGTTGGTTGCTCTTCCTGTTGCAGGCGTCTTTGTACAGCATGTATGGCGTGCCAGTT 42014 Query 71851 TCAATCTGAGATTCTATAATCGCTTTCCA-GACGACTCGAGCCTTTATTATATTCTTGTA 71909 || |||| || || |||| || | ||| || || ||||||| | | |||| | Sbjct 42015 TCTGTCTGGGACTCGATAACGGCGTGCCACAACTGCT-GAGCCTTCACCACGCGCTTGAA 42073 Query 71910 --TCTCTT--TTCTCTTTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAGCA- 71964 || | | ||||| | | ||||| | | ||||||||| || |||| |||| Sbjct 42074 CTTCCCCTGCTTCTCATAGG--AGGTGTAGAGCTT--TTCGAACTCCTC-CCCCCAGCAC 42128 Query 71965 TTGTCTAATCCAGGACATTCATTCGGACACATCAATGACCACT-CTCCATCATCATTTAC 72023 | ||| | || || || || || |||||||||| ||||| | ||| | || | || Sbjct 42129 TCGTCCAGCCCTGGGCACTCGTTGGGACACATCAGAGACCAGTCCTCGTTGCTC-TCCAC 42187 Query 72024 TCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGCT 72082 || ||||| || || || || ||||| || || || || || || |||| ||| |||| Sbjct 42188 TCTCTTCATGAACAGGTCGGGRATCCACAG-GCCGTAGAAAAGGTCCCTGGCTCTCTGCT 42246 Query 72083 CCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTT 72142 |||| ||||| || ||||| || || || ||||| | | | || | ||||| || | Sbjct 42247 CCTCCTTTCCGGTGTTCTTCTTTAGCTCCAGGAAGTCAAACACGTCGGCGTGCCAGGGCT 42306 Query 72143 CCAAGTATATGGCCATAACTCCCGGCCGTTTGTT 72176 ||| ||| ||||| | |||| || | ||||| Sbjct 42307 CCAGGTACATGGCGAAGGCTCCTGGTCTCTTGTT 42340 >seq4546 Length=26461 Score = 96.9 bits (106), Expect = 5e-15 Identities = 103/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146 ||||||| | |||||| | |||||||| | || || || |||||||| || | ||| | Sbjct 23433 CCTCATCCCGACTAATCAGCTCGTTGGAGTAGGTAAGGCCAGGCATTAGTCCTCTCTTCT 23492 Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206 | |||||||| || | || ||||| || || |||||||| || || ||||||||||| | Sbjct 23493 TGAGCCAAAAGATGGCAGCGAATGAGCCGGAGAAGAAGATGCCCTCCACTGCCGCAAAAG 23552 Query 42207 CAATAAGTCTCTCTCC 42222 | | || || ||| || Sbjct 23553 CCACAATTCGCTCCCC 23568 >seq1 Length=4870262 Score = 93.3 bits (102), Expect = 6e-14 Identities = 120/166 (72%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 72761 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAA 72820 |||| || | ||| || || || ||||||||||| || || || || | || || || | Sbjct 4205994 CACTGAACACTTTCTTGGTCTCTTTGTGTAGATTAGACACAGCAATCCGTGCAGCCAGGA 4206053 Query 72821 TGGCATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCTGCCAGAGTGTCCA 72880 ||||| || || |||| || || |||||||| | ||||||||||||||||||| Sbjct 4206054 GAGCATAGTCAGGGTGTTTGGTGGTGAGGGTGGCTGCGGTCTCTGCTGCCAGAGTGTCCA 4206113 Query 72881 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 72926 || || || || || ||| | || | || ||||| |||||||| Sbjct 4206114 GCTCCACGGTGGTGACCCCACTGTACAGACCCTGGATCACCTTCAT 4206159 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671051205261640