Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20aleutianus_20[genbank_20GCA_5F001910805.1_202016-12-20] 10,489 sequences; 899,650,391 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq412 138 2e-27 seq454 136 6e-27 seq2938 95.1 2e-14 >seq412 Length=547801 Score = 138 bits (152), Expect = 2e-27 Identities = 179/248 (72%), Gaps = 0/248 (0%) Strand=Plus/Minus Query 8693 GGACACCCTTTGACGTTGCTACAGACTAGAGACTGGATAGTTGCACTCTTGACGATCCCA 8752 ||||||| ||| |||| || || || || | ||| ||| | |||||||| Sbjct 407104 GGACACCACTTGGTGTTGAGGCACACYAGTTTCTTCAAAGTGGCAGTTTTGACGATATTG 407045 Query 8753 AACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACGTTC 8812 || ||| ||||| || ||||||||||| |||||||| | |||||||||||| ||| Sbjct 407044 AAGCCCGTCTCTCCCCCAAAGGTGCTGGGCTTCCAGTACTCAGGGGAGCAGATGGGGTTT 406985 Query 8813 GCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAGATG 8872 |||| |||||||| ||||| || ||||| |||| ||| | || |||||||| ||||| Sbjct 406984 GCCAGCAGGCCTTTCAGGGAGAAGGGAGCACCCATCTCCACCATACTCTCACCAAAGATA 406925 Query 8873 GCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACAGCCTCGATGTCT 8932 | | || || | ||||| | || | |||| ||| ||||||| ||| || ||||| Sbjct 406924 CCAGTAGGGCGTGCTTTTTCTAGTAAAAGGCCGGGGTAAAACTCCAAAGCATCTATGTCA 406865 Query 8933 CCGTAAAG 8940 ||||| || Sbjct 406864 CCGTAGAG 406857 Score = 127 bits (140), Expect = 3e-24 Identities = 177/248 (71%), Gaps = 0/248 (0%) Strand=Plus/Minus Query 8693 GGACACCCTTTGACGTTGCTACAGACTAGAGACTGGATAGTTGCACTCTTGACGATCCCA 8752 ||||||| ||| |||| || || || || | ||| | | | |||||||| Sbjct 393118 GGACACCACTTGGTGTTGAGGCACACCAGTTTCTTCAAAGTGGAAGTTTTGACGATATTG 393059 Query 8753 AACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACGTTC 8812 || ||| ||||| || ||||||||||| |||||||| | |||||||||||| ||| Sbjct 393058 AAGCCCGTCTCTCCCCCAAAGGTGCTGGGCTTCCAGTACTCAGGGGAGCAGATGGGGTTT 392999 Query 8813 GCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAGATG 8872 ||| ||||| || ||||| || ||||| |||| ||| | || |||||||| || | Sbjct 392998 CCCAGCAGGCCCTTCAGGGAGAAGGGAGCACCCATCTCCACCATACTCTCACCAAACAGT 392939 Query 8873 GCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACAGCCTCGATGTCT 8932 ||||||||| | || |||| || || |||| ||| ||||||| ||| || ||||| Sbjct 392938 CTGTTGGGACGTGTTTTCTCCAGCAGGATGCCGGGGTAGAACTCCAAAGCATCTATGTCA 392879 Query 8933 CCGTAAAG 8940 || || || Sbjct 392878 CCATAGAG 392871 >seq454 Length=519262 Score = 136 bits (150), Expect = 6e-27 Identities = 171/235 (73%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 8741 TTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAG 8800 |||||||| | || |||||| || ||||| ||||| || |||||||| |||| ||| Sbjct 193798 TTGACGATGTCGAAGCCCACGCTGCCTCCGAACGTGCTCGGCTTCCAGTACTCCGGCGAG 193739 Query 8801 CAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTC 8860 |||||| ||| |||| | ||| |||||||| | || ||||||| ||| | ||| || Sbjct 193738 CAGATGGGGTTTCCCATTAAGCCCTTGAGGGAGTAAGGGGCCCCCATCTCCACCATGGTC 193679 Query 8861 TCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACA 8920 || || ||||||||||||| |||||||| ||||||| | || | ||| | ||||| Sbjct 193678 TCCCCAAAGATGGCGTTGGTCCGGGGCTTCTCCACCAGCAGACCCGGGTAGAGTTCCACG 193619 Query 8921 GCCTCGATGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCTG 8975 || |||| || || || | || || | || || ||||| || ||||||| Sbjct 193618 GCGTCGACGTGCCCATAGAACTCCTCCAGCACTGCTGCCATTTCTTTCTCTCCTG 193564 Score = 104 bits (114), Expect = 3e-17 Identities = 168/242 (69%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 9622 ATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCTCGTTTCAGA 9681 ||||| || |||||||| || || ||||| ||| || || || | |||| Sbjct 191816 ATGAGCCGTGTGGTCTGGAAGAGCCTCTCGTCGTCCCAGTCCGGGTGGACCTCCTTCAAC 191757 Query 9682 ACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATGAGACCAGGC 9741 || || ||||| | ||||||||| | |||||||| || ||||||||||| || || || Sbjct 191756 ACGTCACACACCCGGTTGTGTTCTCGTAGCCAGATGGTGGCGTACATCATCAGGCCGGGG 191697 Query 9742 ACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACTTCGGGAGGA 9801 |||||||| || ||||| || || ||||| | || | ||||| |||| ||||| Sbjct 191696 ACCAGGCCGAACGCCTCGTGGCCCACAGCGAAGCGGTGAGGGTCGGGAACTTGAGGAGGG 191637 Query 9802 TAGATCATGTGCACCTGGACATCTTTGACCGAGGGGGGATACATTTCACCGTCAATAATC 9861 ||| ||||| || || || || || | |||||||||| || || || | || | Sbjct 191636 TAGTGCATGTCAACGCCCACCTCCTTTACTGTTGGGGGATACACCTCTCCATCCAGAACC 191577 Query 9862 TG 9863 || Sbjct 191576 TG 191575 Score = 95.1 bits (104), Expect = 2e-14 Identities = 181/264 (69%), Gaps = 2/264 (1%) Strand=Plus/Minus Query 9322 CTTACTCGGCCAGCTATTTGTTTCGTGAACGATTCTACTAGCTGGGTAATGCCGTGGGTC 9381 ||||| || ||||| || || || || ||||| || || || | | |||||||| | Sbjct 192679 CTTACCCGTCCAGCGATCTGATTGGTAAACGACTCCACAAGGTTGCCGATGCCGTGCTCC 192620 Query 9382 ATGAGTATGGAATTGTTGTAAACGAAGTTAATGTAGTCATACTTTGTTTTATCAATCTCA 9441 | | | ||| |||||| | || || | | |||| |||| | | | ||||| | Sbjct 192619 GTCACCACGGAGTTGTTGAAGACAAACTGTTTATAGTTGTACTCTTTCTCCTCAATGTGG 192560 Query 9442 AACGCATCCGGCATGAGAGAATGCCAGTGATACAACATGTTAAACTCGGAAAATATACGA 9501 || | ||| ||||| |||| |||||||| |||| |||| |||||||| | || || Sbjct 192559 AAAGTATCGGGCATCAGAGGGTGCCAGTGGTACAGGGTGTTGAACTCGGACGAGATGCGG 192500 Query 9502 TTTTGGTACTGGAA-CGAAGTACCAAAGAGCAGTTCGGGCTTAAACAGCAACTGAAAGTG 9560 || ||||||||||| || | || ||||| ||||| | |||| | || |||| Sbjct 192499 TTCTGGTACTGGAAGCGCTG-GTTGAACAGCAGCTCGGGGTCAAACTTGAGCTTGAAGTT 192441 Query 9561 GTAGCCGCTGAGCTGCTGAACATA 9584 |||||||| || ||||| || || Sbjct 192440 ATAGCCGCTCAGGTGCTGCACGTA 192417 >seq2938 Length=62945 Score = 95.1 bits (104), Expect = 2e-14 Identities = 133/187 (71%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 8751 CAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACGT 8810 |||| || || | || |||||||||||||| ||||||||| | || || || || || Sbjct 60550 CAAAGCCGACTTTGCCTCCGAAGGTGCTGGGCTTCCAGTAATCTGGAGAACATATAGGGT 60491 Query 8811 TCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAGA 8870 | ||| ||||||||| ||||| || || || |||| ||| | |||||||| || || | Sbjct 60490 TTCCCAGGAGGCCTTTAAGGGAGAAGGGGGCGCCCATCTCTATCATGCTCTCTCCAAATA 60431 Query 8871 TGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACAGCCTCGATGT 8930 |||| | || | |||| || || || | ||| || || ||||| || |||| Sbjct 60430 TGGCCCCCTGTCGTGTTCCCTCCAACAGTAAACCAGGGTAAAATTCAACAGCATCAATGT 60371 Query 8931 CTCCGTA 8937 | ||||| Sbjct 60370 CACCGTA 60364 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 708431903542160