Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20aleutianus_20[genbank_20GCA_5F001910805.1_202016-12-20] 10,489 sequences; 899,650,391 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq36 104 4e-18 seq1139 80.6 4e-11 >seq36 Length=1390544 Score = 104 bits (114), Expect = 4e-18 Identities = 93/119 (78%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| |||||||| || | | || || ||||||||||| || ||||| || || || || Sbjct 11374 CGCCAAGCGTCACCGTAAAGTGCTCCGTGATAACATCCAGGGRATCACYAAACCCGCCAT 11315 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 ||| ||||||||||| ||||| ||||| |||||| |||| || || |||| || |||| Sbjct 11314 CCGCCGTCTGGCTCGCCGTGGHGGAGTGAAGCGTATCTCCGGTCTGATCTACGAGGAGA 11256 >seq1139 Length=184447 Score = 80.6 bits (88), Expect = 4e-11 Identities = 142/209 (68%), Gaps = 10/209 (5%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || ||| ||||||| || |||||||| || || ||||| | |||||||| || ||| Sbjct 108673 CTCCGTGATGACATCCAGGGGATCACCAAACCCGCCATCCGCCAGCTGGCTCGCCGCGGT 108732 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 ||| |||| | || |||| || |||| || ||| | ||| || Sbjct 108733 GGA----------TCTCCTGTCTGATCTACGAGGAGACCCGCAGTGTGCTAAAGGGTTTG 108782 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 || ||| ||| ||||| || || ||| ||| ||||||||||| || | ||||| || Sbjct 108783 CTGGAGAACGTGATCCAGGACGCCGTCCCCTACACCGAGCACGCCAAGAGGAAGACGGTG 108842 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAA 16662 || ||||| || | ||| | || |||| Sbjct 108843 CCCGCCATGTATGTGGTCCACGCTCTGAA 108871 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79065609833877