Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20aleutianus_20[genbank_20GCA_5F001910805.1_202016-12-20] 10,489 sequences; 899,650,391 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq3303 235 7e-57 seq1 84.2 3e-11 >seq3303 Length=47767 Score = 235 bits (260), Expect = 7e-57 Identities = 724/1109 (65%), Gaps = 21/1109 (2%) Strand=Plus/Plus Query 62274 TTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTA 62333 ||||| ||||| || |||| | |||||| || | || | || ||||| || || Sbjct 41241 TTCTTCATCTCCTCGCTCCACAGCCCTCTCTCCGTCAGGTCTTTGAGCAGATGAGGGTTG 41300 Query 62334 ACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCC 62393 || | ||||| ||||| || | || || || ||||| || || ||||| || | ||| Sbjct 41301 ACGATCTGAAACTCTCCGGAGAGGACCCTGCGGGTGTAGATGTTGCTGGTGTAGGCTTCG 41360 Query 62394 ACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAAT 62453 | ||||| || || |||| || || || || || || || ||||| || |||| || Sbjct 41361 ATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTGGGCATCGGGGCCAGCAGC 41420 Query 62454 AAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAG-AGGTTCCCAATTCCAA-A 62511 | || || || | |||| | ||| || || || || || |||| | |||| | Sbjct 41421 AGGCTGTTCCTCACGCCGTGGATGGCGATCTTCTCCTTCAGCAGCTTCC--AGTCCAGCA 41478 Query 62512 GATCCGACGG-TACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGAT 62570 | || | || | | | | | || || || || ||| || || Sbjct 41479 GTTCGGTGGGCTTCTTCTCCCACATGTCGTACT-GCAGGATGCCCTTGCTGACGGGAGAG 41537 Query 62571 CCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCA 62630 ||| | || || ||||| || || || | || || || || |||||||| | || Sbjct 41538 CCTGCGTACGTCTCGTAGGGGCCGAGCTCGGCGGCCAGCTCGCAGCTCGCCTCCAGGGCG 41597 Query 62631 CCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAAT 62690 ||| || |||| |||||||| | |||| || || || || ||| || || Sbjct 41598 GCGTGGTAGATGGCCTCGAAGATTTGAATATTCAGCAGCTGAGCCTCTTTGCTTTCGAAC 41657 Query 62691 GGATAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTA 62750 || ||| | ||| || || || ||||| || ||||| || ||||| || || || || Sbjct 41658 GGGTAACGCATGAGGATGAAGGCATCCGCCAAACCTTGGACGCCAATTCCAATCGGCCTG 41717 Query 62751 TGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTA 62810 || | ||| || || |||| ||||| || | ||||| || ||||| || || | || Sbjct 41718 TGGCGCTTGTTGGACTTTTCCGCTTCGGGCACTGGATAGTAGTTAATTTCGATGACCTTG 41777 Query 62811 TTGAGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCCCA 62870 || | ||| |||| ||||||||| |||| |||||| ||| ||||| || Sbjct 41778 TTCAAATTCTTGACGATTACTTTGGTCACAGATGCCAGTTTTTTAAAGTCAAAAGTCCGC 41837 Query 62871 TCTA---TTACAAACATGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTCAT-- 62925 || | || ||||||| | |||| || ||||||||||| || |||||||||| Sbjct 41838 TCCGGGGTGACGTACATGTTGAGCGCAATTGAGGCCAGATTACACACCGCTACCTCATCG 41897 Query 62926 TAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAAT 62985 | || | || | || || || ||||| || || || ||||||| || || | || Sbjct 41898 TGGC--TGGTGTACTCRATAATTTCTGTGCAGAGGTTGCTGGACTTGATGGTGCCCAGAT 41955 Query 62986 TTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTT 63045 | ||||| || ||||| |||| || || || || || || ||| |||| || ||||||| Sbjct 41956 TCTGTTGGTTGCTCTTCCTGTTGCAGGCGTCTTTGTACAGCATGTATGGCGTGCCAGTTT 42015 Query 63046 CAATCTGAGATTCTATAATCGCTTTCCA-GACGACTCGAGCCTTTATTATAGATTTGTAT 63104 | |||| || || |||| || | ||| || || ||||||| | | ||| | Sbjct 42016 CTGTCTGGGACTCGATAACGGCGTGCCACAACTGCT-GAGCCTTCACCACGCGCTTGAAC 42074 Query 63105 CTCCTTTCTCTTTCGTATAG--TGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGT 63162 ||| || ||| |||| || || | ||||||||| || ||||| | || Sbjct 42075 TTCC--CCTGCTTCTCATAGGAGGTGTAGAGCTTTTCGAACTCCTCCCCCCAGCACTCGT 42132 Query 63163 CCAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTT 63222 ||| || || || || | |||||||||| ||||| || ||| || ||||| | Sbjct 42133 CCAGCCCTGGGCACTCGTTGGGACACATCAGAGACCAGTCCTCGTTGCTCTCCACTCTCT 42192 Query 63223 TCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGTTCCTCG 63281 |||| || || || || ||||| || || || || || || |||| ||| || ||||| Sbjct 42193 TCATGAACAGGTCGGGRATCCACAG-GCCGTAGAAAAGGTCCCTGGCTCTCTGCTCCTCC 42251 Query 63282 TTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAG 63341 ||||| || ||||| || || || ||||| | | | || | ||||| || |||| | Sbjct 42252 TTTCCGGTGTTCTTCTTTAGCTCCAGGAAGTCAAACACGTCGGCGTGCCAGGGCTCCAGG 42311 Query 63342 TATATGGCCATAACTCCAGGCCGTTTGTT 63370 || ||||| | |||| || | ||||| Sbjct 42312 TACATGGCGAAGGCTCCTGGTCTCTTGTT 42340 >seq1 Length=4870262 Score = 84.2 bits (92), Expect = 3e-11 Identities = 118/166 (71%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 63955 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAA 64014 |||| || | ||| || || || ||||||||||| || || || || | || || || | Sbjct 4205994 CACTGAACACTTTCTTGGTCTCTTTGTGTAGATTAGACACAGCAATCCGTGCAGCCAGGA 4206053 Query 64015 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 64074 ||||| || || |||| || || |||||||| | || |||||||||||||||| Sbjct 4206054 GAGCATAGTCAGGGTGTTTGGTGGTGAGGGTGGCTGCGGTCTCTGCTGCCAGAGTGTCCA 4206113 Query 64075 ATTCTACCGTTGTTACTCCATTATATATTCCTTGAATAACCTTCAT 64120 || || || || || ||| | || | || || || |||||||| Sbjct 4206114 GCTCCACGGTGGTGACCCCACTGTACAGACCCTGGATCACCTTCAT 4206159 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622865523835240