Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20aleutianus_20[genbank_20GCA_5F001910805.1_202016-12-20] 10,489 sequences; 899,650,391 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq3303 149 6e-31 seq1 118 1e-21 >seq3303 Length=47767 Score = 149 bits (164), Expect = 6e-31 Identities = 607/945 (64%), Gaps = 35/945 (4%) Strand=Plus/Plus Query 145058 TTGACGACCTGAAACTCGCCGGCCAACACACGACGCAAATACACGTTAGACGTGAAGGGT 145117 ||||||| ||||||||| |||| | || | || || | ||| ||| ||| | Sbjct 41298 TTGACGATCTGAAACTCTCCGGAGAGGACCCTGCGGGTGTAGATGTTGCTGGTGTAGGCT 41357 Query 145118 TCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGGCATGTACGCCACC 145177 || | |||||||| ||||||||||| || ||||| | || |||||||| |||| | Sbjct 41358 TCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTGGGCATCGGGGCCAGC 41417 Query 145178 AATAATGAATTGCGCAGGCCGTGCTTCTTGATGTCTTCCTTTAGCGTACCCCAATCCCAT 145237 | | || | || |||||| | ||| | ||||| ||| ||| ||| Sbjct 41418 AGCAGGCTGTTCCTCACGCCGTGGATGGCGATCTTCTCCTTCAGCAGCTTCCAGTCCAGC 41477 Query 145238 AGCGAAGTCGGCCTCACGTCCCACATGTCGTACTGCAAAATGCCCTCGCTGGCGGGGCTG 145297 || || ||| || ||||||||||||||||||| ||||||| |||| |||| | Sbjct 41478 AGTTCGGTGGGCTTCTTCTCCCACATGTCGTACTGCAGGATGCCCTTGCTGACGGGAGAG 41537 Query 145298 CCTTGAAAGGAACTGTAACTGCCCCAAGTTTTG--GCGAGCTCGCAACTCGCCTCCAGAG 145355 ||| | | ||| ||| || | | || |||||||| ||||||||||| | Sbjct 41538 CCTGCGTACGTCTCGTAGGGGCCG--AGCTCGGCGGCCAGCTCGCAGCTCGCCTCCAGGG 41595 Query 145356 CGCCGAAATAAATTGTCTCGGCAATTTGCCTGTTGAGCAGCATCGCTTCATCGCTCTCGT 145415 || || || || | |||| ||||| | || |||||| || || | ||| ||| Sbjct 41596 CGGCGTGGTAGATGGCCTCGAAGATTTGAATATTCAGCAGCTGAGCCTCTTTGCTTTCGA 41655 Query 145416 ACGGCATGCGCAGCAGTACAAAAGCATCGGCGAGCCCCTGTATTCCCACGCCGATGGGCC 145475 |||| |||| || | || ||||| || | || || | || | || || |||| Sbjct 41656 ACGGGTAACGCATGAGGATGAAGGCATCCGCCAAACCTTGGACGCCAATTCCAATCGGCC 41715 Query 145476 GATGTTTCATGTTG--CTCATCCTCGCCG---ACTCGATAGGATATCGATTACGGTCGAT 145530 || | ||||| || ||| | || ||| ||||| | | ||| ||||| Sbjct 41716 TGTGGCGCTTGTTGGACTTTTCCGCTTCGGGCACTGGATAGTAGTTA-ATT----TCGAT 41770 Query 145531 AATTTTATTCAAGTTTCGCACTACTACCTTTGTAATG--TGCCGCAACTTTTCAAAGTCA 145588 | || ||||| || || | ||| || || | |||| | |||| ||||||| Sbjct 41771 GACCTTGTTCAAATTCTTGACGATTACTTTGGTCACAGATGCC--AGTTTTTTAAAGTCA 41828 Query 145589 AA---CCGAGCCTCGTCAACGACCACACAGCTATTGACGGCGATCGACGCCAAATTACAA 145645 || ||| || | ||| || | |||| || || || |||| |||||| Sbjct 41829 AAAGTCCGCTCCGGGGTGACGTACA------TGTTGAGCGCAATTGAGGCCAGATTACAC 41882 Query 145646 ACTGCCGTCTCCTCGGCGTCGCTGTATTGTACGATCTCGGCGCACAAATTGCTACATTTG 145705 || || ||| ||| | | |||| | | || || | ||| | ||||| | ||| Sbjct 41883 ACCGCTACCTCATCGTGGCTGGTGTACTCRATAATTTCTGTGCAGAGGTTGCTGGACTTG 41942 Query 145706 ATGGTTCCCAGATTTTGCTGATTACTTTTCCTGTTGCACGCGTCCTTGTAGAGCATGTAC 145765 ||||| |||||||| || || || || ||||||||||| ||||| ||||| |||||||| Sbjct 41943 ATGGTGCCCAGATTCTGTTGGTTGCTCTTCCTGTTGCAGGCGTCTTTGTACAGCATGTAT 42002 Query 145766 GGTCCGCCAGTCTCCACCTGCGTCTCCACGATAAAACGGTG---CAAGTCCTGCGCACGC 145822 || |||||| || ||| | || |||||| ||| ||| | ||| || | Sbjct 42003 GGCGTGCCAGTTTCTGTCTGGGACT---CGATAACGGCGTGCCACAACTGCTGAGCCTTC 42059 Query 145823 ACCTGCTGCTGGTAGCGGCCCT-CTTCTTCGTATTTCCTGTAGAGCTCCTCAAACGCGGA 145881 ||| ||| | | |||| |||| || || ||||||||| || ||| | Sbjct 42060 ACCACGCGCTTGAACTTCCCCTGCTTC-TCATAGGAGGTGTAGAGCTTTTCGAACTCCTC 42118 Query 145882 ACCGTAGCAATCGGACAGGCCGGGACACTTGTTGGGACACATCAGCGACCATACGCCGTT 145941 || |||| ||| ||| || || |||| ||||||||||||||| ||||| | |||| Sbjct 42119 CCCCCAGCACTCGTCCAGCCCTGGGCACTCGTTGGGACACATCAGAGACCAGTCCTCGTT 42178 Query 145942 GGCGTTGACGCGCTCCATAAACAAATCTGGCACCCACAGCGCGTA 145986 | | || | || ||| |||| || || | |||||| |||| Sbjct 42179 GCTCTCCACTCTCTTCATGAACAGGTCGGGRATCCACAGGCCGTA 42223 >seq1 Length=4870262 Score = 118 bits (130), Expect = 1e-21 Identities = 86/100 (86%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 145668 TGTATTGTACGATCTCGGCGCACAAATTGCTACATTTGATGGTTCCCAGATTTTGCTGAT 145727 |||| | ||||||||| | ||||| |||||| |||||||||| |||||||| ||||| | Sbjct 4202897 TGTACTCTACGATCTCCGTGCACAGATTGCTGGATTTGATGGTGCCCAGATTCTGCTGGT 4202956 Query 145728 TACTTTTCCTGTTGCACGCGTCCTTGTAGAGCATGTACGG 145767 | || ||||||||||| |||||||||||||||||||| || Sbjct 4202957 TGCTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTATGG 4202996 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471950913221760