Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20aleutianus_20[genbank_20GCA_5F001910805.1_202016-12-20] 10,489 sequences; 899,650,391 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq3482 122 6e-23 seq317 98.7 7e-16 seq6348 95.1 8e-15 seq908 95.1 8e-15 seq144 95.1 8e-15 seq8 95.1 8e-15 seq481 93.3 3e-14 seq850 91.5 1e-13 seq4142 89.7 3e-13 seq2993 89.7 3e-13 seq2422 89.7 3e-13 seq2118 89.7 3e-13 seq8401 86.0 4e-12 seq267 86.0 4e-12 seq605 82.4 5e-11 >seq3482 Length=36442 Score = 122 bits (134), Expect = 6e-23 Identities = 130/172 (76%), Gaps = 0/172 (0%) Strand=Plus/Plus Query 6319 ACCCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAAAAACG 6378 ||||||| || | ||| || || ||||| || |||||||| ||||||||| |||||||| Sbjct 27298 ACCCGACCAAGTTTTTTGGTTGTGAACTCGGTGCTCAGACCCAGTTTGATAGCAAAAACG 27357 Query 6379 AGCGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGACGGCT 6438 | || | |||||| |||||||| || | | |||| |||||||| | ||||| || | Sbjct 27358 ACCGTTACATCGTCAACGGATCCCACGAGGCGAACAAGTTGCAGGACATGCTTGATGGGT 27417 Query 6439 TTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCGAGCT 6490 | || | || ||||||||||||| || || || ||||| || || || || Sbjct 27418 TCATCAGAAAATTTGTGCTGTGTCCCGAGTGTGACAACCCTGAAACTGATCT 27469 >seq317 Length=644633 Score = 98.7 bits (108), Expect = 7e-16 Identities = 68/77 (88%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||||||||||||||| | |||||||||| |||||||||||| Sbjct 480317 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTAAGGTACTTGTTGACTATCGGTCTCGT 480376 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||||| Sbjct 480377 GCCGGTATTTAGCCTTA 480393 >seq6348 Length=2473 Score = 95.1 bits (104), Expect = 8e-15 Identities = 67/77 (87%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||||||||||||||| | ||||||||| |||||||||||| Sbjct 209 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTAAGGTACTTGTCGACTATCGGTCTCGT 150 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||||| Sbjct 149 GCCGGTATTTAGCCTTA 133 >seq908 Length=276159 Score = 95.1 bits (104), Expect = 8e-15 Identities = 67/77 (87%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||||||||||||||| | ||||||||| |||||||||||| Sbjct 9608 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTAAGGTACTTGTCGACTATCGGTCTCGT 9549 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||||| Sbjct 9548 GCCGGTATTTAGCCTTA 9532 >seq144 Length=754442 Score = 95.1 bits (104), Expect = 8e-15 Identities = 67/77 (87%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||||||||||||||| | ||||||||| |||||||||||| Sbjct 553887 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTAAGGTACTTGTCGACTATCGGTCTCGT 553828 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||||| Sbjct 553827 GCCGGTATTTAGCCTTA 553811 >seq8 Length=2021858 Score = 95.1 bits (104), Expect = 8e-15 Identities = 78/95 (82%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||||||||| ||||| || ||| | || Sbjct 1387187 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGCCAGTAGGGACAGTGGGAATATTGT 1387246 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | | || |||||| |||||||||||||||||| || Sbjct 1387247 TCAACCATTCATGTGCGTCACTAATTAGATGAAGA 1387281 >seq481 Length=400265 Score = 93.3 bits (102), Expect = 3e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| Sbjct 281393 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTACTTGTCGACTATCGGTCTCGT 281334 Query 20007 GGTAATATTTAGCC 20020 | ||||||||| Sbjct 281333 GCCGGTATTTAGCC 281320 >seq850 Length=244436 Score = 91.5 bits (100), Expect = 1e-13 Identities = 67/78 (86%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||||||||||||||| | ||||||||| |||||||||||| Sbjct 22297 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTAAGGTACTTGTCAACTATCGGTCTCGT 22238 Query 20007 GGTAATATTTAGCCTTAT 20024 | |||||||||| || Sbjct 22237 GCCGGTATTTAGCCTAAT 22220 >seq4142 Length=30137 Score = 89.7 bits (98), Expect = 3e-13 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||| ||||||||||||||| | ||||||||| ||||||||||| Sbjct 748 CTCTCTCTTCAAAGTTGTTTTCAACTTTCCCTTAAGGTACTTGTCGACTATCGGTCTCRT 807 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||||| Sbjct 808 GCCRGTATTTAGCCTTA 824 >seq2993 Length=46213 Score = 89.7 bits (98), Expect = 3e-13 Identities = 66/77 (86%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 ||||||||||||||||||||| |||||||||| | ||||||||| |||||||||||| Sbjct 14440 CTCTCTCTTCAAAGTTCTTTTGAACTTTCCCTTAAGGTACTTGTCGACTATCGGTCTCGT 14499 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||||| Sbjct 14500 GCCGGTATTTAGCCTTA 14516 >seq2422 Length=113570 Score = 89.7 bits (98), Expect = 3e-13 Identities = 66/77 (86%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 ||||||||||| |||||||||||||||||||| | ||||||||| |||||||||||| Sbjct 35781 CTCTCTCTTCAGAGTTCTTTTCAACTTTCCCTTAAGGTACTTGTCGACTATCGGTCTCGT 35722 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||||| Sbjct 35721 GCCGGTATTTAGCCTTA 35705 >seq2118 Length=114703 Score = 89.7 bits (98), Expect = 3e-13 Identities = 66/77 (86%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||||||||||||||| | ||||||||| |||| ||||| | Sbjct 26974 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTAAGGTACTTGTCGACTATTGGTCTTGT 26915 Query 20007 GGTAATATTTAGCCTTA 20023 | | |||||||||||| Sbjct 26914 GCTGGTATTTAGCCTTA 26898 >seq8401 Length=1234 Score = 86.0 bits (94), Expect = 4e-12 Identities = 69/80 (86%), Gaps = 4/80 (5%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCG-CTATC--GGTCT 20003 |||||||||||||||||||||||||||||||| | ||||||| |||| ||||| ||||| Sbjct 904 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTAAGGTACTT-TTCGACTATCGGGGTCT 846 Query 20004 CGCGGTAATATTTAGCCTTA 20023 || | |||||||||||| Sbjct 845 CGTGCCGGTATTTAGCCTTA 826 >seq267 Length=611708 Score = 86.0 bits (94), Expect = 4e-12 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 ||||||||||||||||| |||||||||||||| | |||||||||| ||||||| ||| Sbjct 321211 CTCTCTCTTCAAAGTTCCTTTCAACTTTCCCTTAGGGTACTTGTTGACTATCGGGCTCAT 321270 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||||| Sbjct 321271 GCCGGTATTTAGCCTTA 321287 >seq605 Length=336214 Score = 82.4 bits (90), Expect = 5e-11 Identities = 66/79 (84%), Gaps = 2/79 (3%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGT--TCGCTATCGGTCTC 20004 |||||||||||||||||||||||||||||||| | ||||||||| | || |||||| | Sbjct 187075 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTAAGGTACTTGTCGACTCTCTCGGTCCC 187134 Query 20005 GCGGTAATATTTAGCCTTA 20023 | | |||||||||||| Sbjct 187135 GTGCCGGTATTTAGCCTTA 187153 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334904382129359