Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20aleutianus_20[genbank_20GCA_5F001910805.1_202016-12-20] 10,489 sequences; 899,650,391 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq3303 235 7e-57 seq4546 93.3 5e-14 seq1 93.3 5e-14 >seq3303 Length=47767 Score = 235 bits (260), Expect = 7e-57 Identities = 725/1109 (65%), Gaps = 21/1109 (2%) Strand=Plus/Plus Query 62129 TTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTA 62188 ||||| ||||| || |||| | |||||| || | || | || ||||| || || Sbjct 41241 TTCTTCATCTCCTCGCTCCACAGCCCTCTCTCCGTCAGGTCTTTGAGCAGATGAGGGTTG 41300 Query 62189 ACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCC 62248 || | ||||| ||||| || | || || || ||||| || || ||||| || | ||| Sbjct 41301 ACGATCTGAAACTCTCCGGAGAGGACCCTGCGGGTGTAGATGTTGCTGGTGTAGGCTTCG 41360 Query 62249 ACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAAT 62308 | ||||| || || |||| || || || || || || || ||||| || |||| || Sbjct 41361 ATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTGGGCATCGGGGCCAGCAGC 41420 Query 62309 AAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAG-AGGTTCCCAATTCCAA-A 62366 | || || || | |||| | ||| || || || || || |||| | |||| | Sbjct 41421 AGGCTGTTCCTCACGCCGTGGATGGCGATCTTCTCCTTCAGCAGCTTCC--AGTCCAGCA 41478 Query 62367 GATCCGACGG-TACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGAT 62425 | || | || | | | | | || || || || ||| || || Sbjct 41479 GTTCGGTGGGCTTCTTCTCCCACATGTCGTACT-GCAGGATGCCCTTGCTGACGGGAGAG 41537 Query 62426 CCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCA 62485 ||| | || || ||||| || || || | || || || || |||||||| | || Sbjct 41538 CCTGCGTACGTCTCGTAGGGGCCGAGCTCGGCGGCCAGCTCGCAGCTCGCCTCCAGGGCG 41597 Query 62486 CCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGCGCTTCCAGGCTATCAAAT 62545 ||| || |||| |||||||| | |||| || || || || ||| || || Sbjct 41598 GCGTGGTAGATGGCCTCGAAGATTTGAATATTCAGCAGCTGAGCCTCTTTGCTTTCGAAC 41657 Query 62546 GGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTA 62605 || ||| | ||| || || || || || || ||||| || ||||| || || || || Sbjct 41658 GGGTAACGCATGAGGATGAAGGCATCCGCCAAACCTTGGACGCCAATTCCAATCGGCCTG 41717 Query 62606 TGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTA 62665 || | ||| || || |||| ||||| || | ||||| || ||||| || || | || Sbjct 41718 TGGCGCTTGTTGGACTTTTCCGCTTCGGGCACTGGATAGTAGTTAATTTCGATGACCTTG 41777 Query 62666 TTGAGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCCCA 62725 || | ||| |||| ||||||||| |||| |||||| ||| ||||| || Sbjct 41778 TTCAAATTCTTGACGATTACTTTGGTCACAGATGCCAGTTTTTTAAAGTCAAAAGTCCGC 41837 Query 62726 TCTA---TTACAAACATGTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTCAT-- 62780 || | || ||||||| | |||| || ||||||||||| || |||||||||| Sbjct 41838 TCCGGGGTGACGTACATGTTGAGCGCAATTGAGGCCAGATTACACACCGCTACCTCATCG 41897 Query 62781 TAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAAT 62840 | || | || | || || || ||||| || || || |||||||||| || | || Sbjct 41898 TGGC--TGGTGTACTCRATAATTTCTGTGCAGAGGTTGCTGGACTTGATGGTGCCCAGAT 41955 Query 62841 TTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTT 62900 | ||||| || ||||| |||| || || || || || || ||| |||| || ||||||| Sbjct 41956 TCTGTTGGTTGCTCTTCCTGTTGCAGGCGTCTTTGTACAGCATGTATGGCGTGCCAGTTT 42015 Query 62901 CAATCTGAGATTCTATAATCGCTTTCCA-GACGACTCGAGCCTTTATTATAGATTTGTAT 62959 | |||| || || |||| || | ||| || || ||||||| | | ||| | Sbjct 42016 CTGTCTGGGACTCGATAACGGCGTGCCACAACTGCT-GAGCCTTCACCACGCGCTTG-AA 42073 Query 62960 CTCTTTTCTCTTTCGTATAG--TGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGT 63017 || | || ||| |||| || || | ||||||||| || ||||| | || Sbjct 42074 CT-TCCCCTGCTTCTCATAGGAGGTGTAGAGCTTTTCGAACTCCTCCCCCCAGCACTCGT 42132 Query 63018 CCAGTCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTT 63077 |||| || || || || | |||||||||| ||||| || ||| || ||||| | Sbjct 42133 CCAGCCCTGGGCACTCGTTGGGACACATCAGAGACCAGTCCTCGTTGCTCTCCACTCTCT 42192 Query 63078 TCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGTTCCTCG 63136 |||| || || || || ||||| || || || || || || |||| ||| || ||||| Sbjct 42193 TCATGAACAGGTCGGGRATCCACAG-GCCGTAGAAAAGGTCCCTGGCTCTCTGCTCCTCC 42251 Query 63137 TTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAG 63196 ||||| || ||||| || || || ||||| | | | || | ||||| || |||| | Sbjct 42252 TTTCCGGTGTTCTTCTTTAGCTCCAGGAAGTCAAACACGTCGGCGTGCCAGGGCTCCAGG 42311 Query 63197 TATATGGCCATAACTCCAGGCCGTTTGTT 63225 || ||||| | |||| || | ||||| Sbjct 42312 TACATGGCGAAGGCTCCTGGTCTCTTGTT 42340 >seq4546 Length=26461 Score = 93.3 bits (102), Expect = 5e-14 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 32683 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 32742 |||| || | |||||| | |||||||| | || || || |||||||| || | ||| | Sbjct 23433 CCTCATCCCGACTAATCAGCTCGTTGGAGTAGGTAAGGCCAGGCATTAGTCCTCTCTTCT 23492 Query 32743 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 32802 | |||||||| |||| || ||||| || || ||||| || || || ||||||||||| | Sbjct 23493 TGAGCCAAAAGATGGCAGCGAATGAGCCGGAGAAGAAGATGCCCTCCACTGCCGCAAAAG 23552 Query 32803 CAATAAGTCTCTCTCC 32818 | | || || ||| || Sbjct 23553 CCACAATTCGCTCCCC 23568 >seq1 Length=4870262 Score = 93.3 bits (102), Expect = 5e-14 Identities = 120/166 (72%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 63810 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAA 63869 |||| || | ||| || || |||||||||||||| || || || || | || || || | Sbjct 4205994 CACTGAACACTTTCTTGGTCTCTTTGTGTAGATTAGACACAGCAATCCGTGCAGCCAGGA 4206053 Query 63870 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 63929 ||||| || || |||| || || |||||||| | || |||||||||||||||| Sbjct 4206054 GAGCATAGTCAGGGTGTTTGGTGGTGAGGGTGGCTGCGGTCTCTGCTGCCAGAGTGTCCA 4206113 Query 63930 ATTCTACCGTTGTTACACCATTATATATTCCTTGGATAACCTTCAT 63975 || || || || || ||| | || | || ||||| |||||||| Sbjct 4206114 GCTCCACGGTGGTGACCCCACTGTACAGACCCTGGATCACCTTCAT 4206159 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633548922924400