Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20aleutianus_20[genbank_20GCA_5F001910805.1_202016-12-20] 10,489 sequences; 899,650,391 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq3303 102 2e-16 seq1066 95.1 2e-14 seq1178 93.3 9e-14 seq3433 91.5 3e-13 seq3276 91.5 3e-13 seq887 91.5 3e-13 seq379 91.5 3e-13 seq3831 89.7 1e-12 seq2973 89.7 1e-12 seq865 89.7 1e-12 seq2754 87.8 4e-12 seq1247 86.0 1e-11 >seq3303 Length=47767 Score = 102 bits (112), Expect = 2e-16 Identities = 206/304 (68%), Gaps = 2/304 (1%) Strand=Plus/Plus Query 293919 GGTGTACTCGACAATCTCAGCACAGAGGTTACTGCCCTTGATGGTGCCCGCATTAGACTG 293978 ||||||||| | ||| || | |||||||| ||| ||||||||||||| ||| || Sbjct 41903 GGTGTACTCRATAATTTCTGTGCAGAGGTTGCTGGACTTGATGGTGCCCAGATTCTGTTG 41962 Query 293979 CATGTTCTTGGCATTGACACTGTCTTTGTTGAGGACATATGGCATACCCGTTTCAATCTG 294038 || |||| ||| |||||||| || | |||||| | || ||||| |||| Sbjct 41963 GTTGCTCTTCCTGTTGCAGGCGTCTTTGTACAGCATGTATGGCGTGCCAGTTTCTGTCTG 42022 Query 294039 AGTGGTGACCATGGTGTTCCAGACATCGCGAGCCTTCACCACGCGCTTTGCCTTCCCCTC 294098 | || | || || ||| | | ||||||||||||||||||| |||||||| Sbjct 42023 GGACTCGATAACGGCGTGCCACAACTGCTGAGCCTTCACCACGCGCTTGAACTTCCCCTG 42082 Query 294099 AGACTCATACTTGGTGTAAAGCTCTTCGTATTCCTTGCCATATACATCAGACAGGCCAGG 294158 |||||| |||||| |||| |||| | |||| || | || ||| || || Sbjct 42083 CTTCTCATAGGAGGTGTAGAGCTTTTCGAACTCCTCCCCCCAGCACTCGTCCAGCCCTGG 42142 Query 294159 GCACTCGTGAGGGTCA-AGTAGAGACCACTGGGCATCAGTCTCCACGCGCTTCATGAATA 294217 |||||||| ||| || | |||||||| | | | ||||||| | ||||||||| | Sbjct 42143 GCACTCGT-TGGGACACATCAGAGACCAGTCCTCGTTGCTCTCCACTCTCTTCATGAACA 42201 Query 294218 GATC 294221 | || Sbjct 42202 GGTC 42205 >seq1066 Length=268342 Score = 95.1 bits (104), Expect = 2e-14 Identities = 66/75 (88%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 142501 ATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCG 142560 ||||||||| |||||||||||||||||| ||||||||||||| ||||||||||||| Sbjct 204665 ATAGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCG 204724 Query 142561 AGCCCCACATCGGGC 142575 |||||||| | |||| Sbjct 204725 AGCCCCACGTTGGGC 204739 Score = 95.1 bits (104), Expect = 2e-14 Identities = 66/75 (88%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 142501 ATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCG 142560 ||||||||| |||||||||||||||||| ||||||||||||| ||||||||||||| Sbjct 206038 ATAGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCG 206097 Query 142561 AGCCCCACATCGGGC 142575 |||||||| | |||| Sbjct 206098 AGCCCCACGTTGGGC 206112 Score = 93.3 bits (102), Expect = 9e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 142502 TAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGA 142561 |||||||| |||||||||||||||||| ||||||||||||| |||||||||||||| Sbjct 181252 TAGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGA 181193 Query 142562 GCCCCACATCGGGC 142575 ||||||| | |||| Sbjct 181192 GCCCCACGTTGGGC 181179 Score = 93.3 bits (102), Expect = 9e-14 Identities = 68/80 (85%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 142502 TAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGA 142561 |||||||| |||||||||||||||||| ||||||||||||| |||||| ||||||| Sbjct 187498 TAGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTKGGTTCGA 187439 Query 142562 GCCCCACATCGGGCAGAAGT 142581 ||||||| | |||| | ||| Sbjct 187438 GCCCCACGTTGGGCGGTAGT 187419 Score = 93.3 bits (102), Expect = 9e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 142502 TAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGA 142561 |||||||| |||||||||||||||||| ||||||||||||| |||||||||||||| Sbjct 188580 TAGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGA 188521 Query 142562 GCCCCACATCGGGC 142575 ||||||| | |||| Sbjct 188520 GCCCCACGTTGGGC 188507 Score = 93.3 bits (102), Expect = 9e-14 Identities = 69/81 (85%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 142501 ATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCG 142560 ||||||||| |||||||||| ||||||| ||||||||||||| ||||||||||||| Sbjct 205362 ATAGCCCGGCTAGCTCAGTCAGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCG 205421 Query 142561 AGCCCCACATCGGGCAGAAGT 142581 |||||||| | |||| |||| Sbjct 205422 AGCCCCACGTTGGGCGCAAGT 205442 Score = 91.5 bits (100), Expect = 3e-13 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 142501 ATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCG 142560 || |||||| |||||||||||||||||| ||||||||||||| ||||||||||||| Sbjct 203958 ATTGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCG 204017 Query 142561 AGCCCCACATCGGGC 142575 |||||||| | |||| Sbjct 204018 AGCCCCACGTTGGGC 204032 Score = 91.5 bits (100), Expect = 3e-13 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 142501 ATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCG 142560 || |||||| |||||||||||||||||| ||||||||||||| ||||||||||||| Sbjct 210838 ATCGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCG 210897 Query 142561 AGCCCCACATCGGGC 142575 |||||||| | |||| Sbjct 210898 AGCCCCACGTTGGGC 210912 >seq1178 Length=237179 Score = 93.3 bits (102), Expect = 9e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 142502 TAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGA 142561 |||||||| |||||||||||||||||| ||||||||||||| |||||||||||||| Sbjct 54708 TAGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGA 54767 Query 142562 GCCCCACATCGGGC 142575 ||||||| | |||| Sbjct 54768 GCCCCACGTTGGGC 54781 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 55963 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 55904 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 55903 CCCCACGTTGGGC 55891 Score = 89.7 bits (98), Expect = 1e-12 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 142502 TAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGA 142561 ||||| || |||||||||||||||||| ||||||||||||| |||||||||||||| Sbjct 55264 TAGCCTGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGA 55205 Query 142562 GCCCCACATCGGGC 142575 ||||||| | |||| Sbjct 55204 GCCCCACGTTGGGC 55191 >seq3433 Length=50457 Score = 91.5 bits (100), Expect = 3e-13 Identities = 68/80 (85%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 142496 GTGAGATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGG 142555 ||||| |||||| |||||||||||||||||| ||||||||||||| |||||||| Sbjct 43153 GTGAGCACGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGG 43094 Query 142556 GTTCGAGCCCCACATCGGGC 142575 ||||||||||||| | |||| Sbjct 43093 GTTCGAGCCCCACGTTGGGC 43074 >seq3276 Length=46908 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 9714 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 9773 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 9774 CCCCACGTTGGGC 9786 >seq887 Length=282828 Score = 91.5 bits (100), Expect = 3e-13 Identities = 70/83 (84%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 142493 GTGGTGAGATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCG 142552 ||| | | || |||||| |||||||||||||||||| ||||||||||||| ||||| Sbjct 168356 GTGCTAATATCGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCG 168415 Query 142553 TGGGTTCGAGCCCCACATCGGGC 142575 |||||||||||||||| | |||| Sbjct 168416 TGGGTTCGAGCCCCACGTTGGGC 168438 >seq379 Length=452540 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 95342 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 95283 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 95282 CCCCACGTTGGGC 95270 >seq3831 Length=22933 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 20291 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 20350 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 20351 CCCACGTTGGGC 20362 >seq2973 Length=77832 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 17061 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 17120 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 17121 CCCACGTTGGGC 17132 >seq865 Length=299391 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 70348 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 70289 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 70288 CCCACGTTGGGC 70277 >seq2754 Length=69405 Score = 87.8 bits (96), Expect = 4e-12 Identities = 67/77 (87%), Gaps = 2/77 (3%) Strand=Plus/Plus Query 142048 CGCATGTCTCTGTGGCGCAATGGAC-AGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGT 142106 |||| ||||||||||||||||||| |||||| ||||||||||||||| ||| | ||||| Sbjct 3326 CGCA-GTCTCTGTGGCGCAATGGAATAGCGCGCTGGACTTCTAATCCAGAGGCTCCGGGT 3384 Query 142107 TCGACCCCCGCCAGAGA 142123 |||| |||| |||||| Sbjct 3385 TCGAGTCCCGGCAGAGA 3401 >seq1247 Length=224428 Score = 86.0 bits (94), Expect = 1e-11 Identities = 63/72 (88%), Gaps = 1/72 (1%) Strand=Plus/Minus Query 142053 GTCTCTGTGGCGCAATGGAC-AGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGTTCGAC 142111 ||||||||||||||||||| |||||| ||||||||||||||| ||| | ||||||||| Sbjct 217756 GTCTCTGTGGCGCAATGGAATAGCGCGCTGGACTTCTAATCCAGAGGCTCCGGGTTCGAG 217697 Query 142112 CCCCGCCAGAGA 142123 |||| |||||| Sbjct 217696 TCCCGGCAGAGA 217685 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027698668691249