Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20aleutianus_20[genbank_20GCA_5F001910805.1_202016-12-20] 10,489 sequences; 899,650,391 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq3303 381 1e-100 seq1 113 9e-20 seq3798 96.9 7e-15 seq4546 87.8 3e-12 seq171 86.0 1e-11 >seq3303 Length=47767 Score = 381 bits (422), Expect = 1e-100 Identities = 793/1161 (68%), Gaps = 46/1161 (4%) Strand=Plus/Plus Query 244010 GAGCCCTTGTGGACGATGAGCTGGGTGCGCATGTTATCGTTCCACAGGCCCAAGCGCTCC 244069 || || ||||| |||| |||||| | ||| | ||| ||||||| || | |||| Sbjct 41217 GACCCGTTGTGAGCGATCAGCTGGTTCTTCATCTCCTCGCTCCACAGCCCT---CTCTCC 41273 Query 244070 ---AGCGCCTCGACCAGGTGCCTGTTCACCACCTGAAACTCTCCCGACAGCACGCGGCGC 244126 || | | || ||| || ||| || | |||||||||||| || || || | ||| Sbjct 41274 GTCAGGTCTTTGAGCAGATGAGGGTTGACGATCTGAAACTCTCCGGAGAGGACCCTGCGG 41333 Query 244127 TGGTAGAGGTTGCTGCTGAGCGGCTCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTG 244186 ||||| ||||||| || | |||||| ||| |||||||||| ||||| || ||| Sbjct 41334 GTGTAGATGTTGCTGGTGTAGGCTTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTG 41393 Query 244187 CTCGCAGTCGGCATGGGCGACACCAGCAGACTGTTCCTCACGCCGTGCCTCTGGATGCGG 244246 || || ||||| || | || |||||| ||||||||||||||||| |||| | Sbjct 41394 GAGGCCGTGGGCATCGGGGCCAGCAGCAGGCTGTTCCTCACGCCGTG------GATGGCG 41447 Query 244247 AGTCTGAGCTCGTTC--CAG-TCCCACATGCCCGAGAGGTCCTCGCGTTTGAGGCCCCAC 244303 | ||| ||| ||| ||| | ||| | || || || | | || ||||| Sbjct 41448 A-TCTT--CTCCTTCAGCAGCTTCCA---GTCCAGCAGTTCGGTGGGCTTCTTCTCCCAC 41501 Query 244304 ATGTCAAACTGCAGCAGCCCCTTGCTGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCG 244363 ||||| ||||||| | |||||||||||||| ||| |||| ||| |||||| ||| Sbjct 41502 ATGTCGTACTGCAGGATGCCCTTGCTGACGGGAGAGCCTGCGTACGTCTCGTAGGGGCCG 41561 Query 244364 TCGCGCTG-GGCCAGCTTACAGCTCTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGAT 244422 || | | |||||||| |||||| | || |||||||||| |||||||| ||||||||| Sbjct 41562 A-GCTCGGCGGCCAGCTCGCAGCTCGCCTCCAGGGCGGCGTGGTAGATGGCCTCGAAGAT 41620 Query 244423 CATCTTGTTCATGTCGCGG-GCCTTGCCGCAGGTGAAGGGGATGCCCATCATCATGAAGA 244481 | |||| | || | |||| || ||| ||| | ||| | |||||| Sbjct 41621 TTGAATATTCA-GCAGCTGAGCCTCTTTGCTTTCGAACGGGTAACGCATGAGGATGAAGG 41679 Query 244482 CGTCGGCCAGTCCCTGCACGCCGATGCCGATGGGTCTGTGTCGCTTGTTGGAGCGCATGG 244541 | || |||| || || ||||| || || || || ||||| ||||||||||| | Sbjct 41680 CATCCGCCAAACCTTGGACGCCAATTCCAATCGGCCTGTGGCGCTTGTTGGACTTTTCCG 41739 Query 244542 CTTCGGGCACGGGGTAAAAGTTGCCGTCGATCACCTTGTTGAGGTTGCGGGTGATCA-TG 244600 |||||||||| || || |||| ||||| |||||||| | || | ||| | | Sbjct 41740 CTTCGGGCACTGGATAGTAGTTAATTTCGATGACCTTGTTCAAATTCTTGACGATTACTT 41799 Query 244601 CGGACGACGTCGGCCAGCAGCTGAAAGTCGTACTCGTAGGGATCCTCGGCGATGGTGATC 244660 || | || ||||| | |||||| | || ||| | || ||||| Sbjct 41800 TGGTC-ACAGATGCCAGTTTTTTAAAGTCAAA-----AG---TCCGCTCCGG-GGTGA-- 41847 Query 244661 CTCACAAACTCGTTGAGGGCGACGCTGGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTG 244720 | || |||||| || | |||||| || || || || ||||| || | || Sbjct 41848 ----CGTACATGTTGAGCGCAATTGAGGCCAGATTACACACCGCTACCTCATCGTGGCTG 41903 Query 244721 GTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGA 244780 ||||||| | ||| || ||||||||||| ||| |||||||||||||||| | ||| || Sbjct 41904 GTGTACTCRATAATTTCTGTGCAGAGGTTGCTGGACTTGATGGTGCCCAGATTCTGTTGG 41963 Query 244781 TTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGG 244840 ||| ||| |||||||||||| ||||| |||||| | ||| || || || |||| Sbjct 41964 TTGCTCTTCCTGTTGCAGGCGTCTTTGTACAGCATGTATGGCGTGCCAGTTTCTGTCTGG 42023 Query 244841 GCGACGAGGACGCTGTTCCAGAGGTCCCTAGCCTTGACCGTCCTGCGAGC-CTTGCCCTC 244899 | ||| ||| || ||| | | | |||||| ||| | || | ||| |||| Sbjct 42024 GACTCGATAACGGCGTGCCACAACTGCTGAGCCTTCACCACGC-GCTTGAACTTCCCCTG 42082 Query 244900 TGCCTCGTAGCGGGTGTACAGGGCCTCGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGG 244959 ||| ||| |||||| || |||||||| |||||| |||||| || || || Sbjct 42083 CTTCTCATAGGAGGTGTAGAGCTTTTCGAACTCCTCCCCCCAGCACTCGTCCAGCCCTGG 42142 Query 244960 GCACGACGCCGGG-CACATGAGACTCCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGA 245018 |||| || ||| ||||| ||| ||| || || | || || |||| |||||| | Sbjct 42143 GCACT-CGTTGGGACACATCAGAGACCAGTCCTCGTTGCTCTCCACTCTCTTCATGAACA 42201 Query 245019 GGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGT 245078 ||||||| ||||| ||| | | ||| |||||||||| |||||||| ||| || |||| Sbjct 42202 GGTCGGGRATCCACAGGCCGTAGAAAAGGTCCCTGGCTCTCTGCTCCTCCTTTCCGGTGT 42261 Query 245079 TCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCATGTAGACAGCGA 245138 ||||| | ||||||| |||||||| |||||| ||||||||||||||| ||| | |||| Sbjct 42262 TCTTCTTTAGCTCCAGGAAGTCAAACACGTCGGCGTGCCAGGGCTCCAGGTACATGGCGA 42321 Query 245139 GGGCGCCGGGCCGCTTGTTGC 245159 ||| || || | |||||||| Sbjct 42322 AGGCTCCTGGTCTCTTGTTGC 42342 >seq1 Length=4870262 Score = 113 bits (124), Expect = 9e-20 Identities = 109/140 (78%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 244097 ACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGCTCGATG 244156 ||||||||||||||||| ||||| | ||| ||||| ||||||| || | ||| ||| Sbjct 4201933 ACCTGAAACTCTCCCGAGAGCACCCTGCGGGTGTAGATGTTGCTGGTGTAGGCCTCAATG 4201992 Query 244157 CTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACCAGCAGA 244216 ||| |||||||||| ||||| || ||| || || |||||||| | || |||||| Sbjct 4201993 GACTCGTTGTTGCCCAGGATCTGTGCGGTGGAAGCTGTGGGCATGGGGGCCAAGAGCAGA 4202052 Query 244217 CTGTTCCTCACGCCGTGCCT 244236 ||||||||||| || ||||| Sbjct 4202053 CTGTTCCTCACACCATGCCT 4202072 Score = 98.7 bits (108), Expect = 2e-15 Identities = 90/114 (79%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 244721 GTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGA 244780 ||||||| || ||||| ||||| || || ||| | |||||||||||||| | ||| || Sbjct 4202896 GTGTACTCTACGATCTCCGTGCACAGATTGCTGGATTTGATGGTGCCCAGATTCTGCTGG 4202955 Query 244781 TTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCG 244834 ||| ||| ||||||||||||||||||||||||| | ||| ||||| ||| Sbjct 4202956 TTGCTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTATGGCGTGCCGGTTTCG 4203009 >seq3798 Length=52883 Score = 96.9 bits (106), Expect = 7e-15 Identities = 67/76 (88%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 43070 CCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCG 43129 |||||||||||| |||||||||||||| ||||||| ||||||||||| || |||||||| Sbjct 8294 CCCCTTCGACTTCATGGAGAACATCTCTCTGGAGGGAAAGACCAACTTCTTTGAGAAGCG 8235 Query 43130 CGTCGCCGACTACCAG 43145 ||| | ||| |||||| Sbjct 8234 CGTGGGCGAGTACCAG 8219 >seq4546 Length=26461 Score = 87.8 bits (96), Expect = 3e-12 Identities = 96/125 (77%), Gaps = 2/125 (2%) Strand=Plus/Minus Query 42708 GTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGG 42767 || || ||| | || || ||||||||||||||||| ||| | ||||| ||||||| ||| Sbjct 23556 GTGGCTTTTGCGGCAGTGGAGGGCATCTTCTTCTCCGGCTCATTCGCTGCCATCTTTTGG 23497 Query 42768 CTCAAGCAGA-AGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGA 42826 |||||| ||| ||| | ||||| || || |||| ||| ||||| || || || |||| Sbjct 23496 CTCAAGAAGAGAGGACT-AATGCCTGGCCTTACCTACTCCAACGAGCTGATTAGTCGGGA 23438 Query 42827 CGAGG 42831 |||| Sbjct 23437 TGAGG 23433 >seq171 Length=790896 Score = 86.0 bits (94), Expect = 1e-11 Identities = 82/105 (78%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 242955 GACAGGACCACTCCGATCGGACAGATGATCAACTCGTACCTGCTCAACAAGAGCGATCTG 243014 ||||||||||| | || |||||| |||||| | | |||||| || ||||| || ||| Sbjct 584207 GACAGGACCACGACTATTGGACAGCTGATCAGCGCTTACCTGGAGAAGAAGAGTGACCTG 584266 Query 243015 GACGATCACGTCGTACACCTCCTGTTCTCGGCCAACCGATGGGAA 243059 || || ||| || ||||| |||||||| || |||||||||||| Sbjct 584267 GAGGACCACACAGTGCACCTGCTGTTCTCTGCAAACCGATGGGAA 584311 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944215385326640