Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20aleutianus_20[genbank_20GCA_5F001910805.1_202016-12-20] 10,489 sequences; 899,650,391 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq3303 170 2e-37 seq1 89.7 6e-13 >seq3303 Length=47767 Score = 170 bits (188), Expect = 2e-37 Identities = 590/909 (65%), Gaps = 19/909 (2%) Strand=Plus/Plus Query 113942 TAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCGGTGGAG 114001 ||||| ||| | ||||| | || | | |||| ||||| |||| ||| |||||||||||| Sbjct 41337 TAGATGTTGCTGGTGTAGGCTTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAG 41396 Query 114002 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCC 114061 || |||||||| || |||| || |||||||| | | || | || ||| Sbjct 41397 GCCGTGGGCATCGGGGCCAGCAGCAGGCTGTTCCTCACGCCGTGGATGGCGATCTTCTCC 41456 Query 114062 TTGAGGGCGTCCCAGTC--GTAGTTGAGCTTTGTCTCCCCCTGCCACATATCAAACTGGA 114119 || || | |||||| | |||| | | | || | || |||||| || |||| | Sbjct 41457 TTCAGCAGCTTCCAGTCCAGCAGTTCGG--TGGGCTTCTTCTCCCACATGTCGTACTGCA 41514 Query 114120 GGATACCTTGGGAGGCTGGCGATCCCTCAAATGTCTCGTATGGGCCCTCAACCTCCGCCA 114179 |||| || | | | | || || || | | |||||||| ||||| | | |||| Sbjct 41515 GGATGCCCTTGCTGACGGGAGAGCCTGCGTACGTCTCGTAGGGGCCGAGCTCGGCGGCCA 41574 Query 114180 ATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATTG 114239 ||| |||||||||| ||||| ||||| || || | ||| || || || ||||| Sbjct 41575 GCTCGCAGCTCGCCTCCAGGGCGGCGTGGTAGATGGCCTCGAAGATTTGAATATTCAGCA 41634 Query 114240 CCTTGGCCTCGTCGGAATCAAACGCGAGTCGGCACAAAATAAATACATCCGCGAGACCTT 114299 || ||||| | | || |||| | || | || || ||||||| | ||||| Sbjct 41635 GCTGAGCCTCTTTGCTTTCGAACGGGTAACGCATGAGGATGAAGGCATCCGCCAAACCTT 41694 Query 114300 GGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCCACGGGAT 114359 |||| || | ||||| || | || | | | || |||||| || ||| |||| Sbjct 41695 GGACGCCAATTCCAATCGGCCTGTGGCGCTTGTTGGACTTTTCCGCTTCGGGCACTGGAT 41754 Query 114360 AAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGA- 114418 | | || | ||||| ||| | || | ||| ||| || || || || | ||| Sbjct 41755 AGTAGTTAATTTCGATGACCTTGTTCAAATTCTTGACGATTACTTTGGTCACAG-ATGCC 41813 Query 114419 AGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGAC 114478 || |||| | |||||| | || ||| |||| ||| | || || ||||| Sbjct 41814 AGTTTTTTAAAGTCAAAAGTCCG---CTCCGGGGTGACGTACATGTTGAGCGCAATTGAG 41870 Query 114479 GCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAA 114538 |||||||||||||| | |||||| | |||||||| |||||||| || || | Sbjct 41871 GCCAGATTACACACCGCTACCTCATCGTGGCTGGTGTACTCRATAATTTCTGTGCAGAGG 41930 Query 114539 TT--TGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCT 114596 || || | ||| |||||||||| |||| ||| || ||| |||| || || || | Sbjct 41931 TTGCTGGA--CTTGATGGTGCCCAGATTCTGTTGGTTGCTCTTCCTGTTGCAGGCGTCTT 41988 Query 114597 TGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCA-GACA 114655 |||| |||||||||||||| || || || || ||||||| || || || | ||| || Sbjct 41989 TGTACAGCATGTATGGCGTGCCAGTTTCTGTCTGGGACTCGATAACGGCGTGCCACAACT 42048 Query 114656 TCGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTTTGTGTAGAGGGCT 114715 | | | || ||| | ||| ||||| || ||| || |||||||| | Sbjct 42049 GCTGAGCCT-TCACCACGCGCTTGAACTTCCCCTGCTTCTCATAGGAGGTGTAGAGCTTT 42107 Query 114716 TCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGAGAGAC 114775 || ||||| || ||| | ||| |||||||| || | || || | |||||| Sbjct 42108 TCGAACTCCTCCCCCCAGCACTCGTCCAGCCCTGGGCACTCGTTGGGACACATCAGAGAC 42167 Query 114776 CATTGACCACCCT--CCTCAACACGCTTCATGAAGAGGTCTGGGATCCAGAGAGCTGAGA 114833 || | || | | ||| || | ||||||||| ||||| || ||||| || | ||| Sbjct 42168 CA--GTCCTCGTTGCTCTCCACTCTCTTCATGAACAGGTCGGGRATCCACAGGCCGTAGA 42225 Query 114834 AGAGATCCC 114842 | || |||| Sbjct 42226 AAAGGTCCC 42234 >seq1 Length=4870262 Score = 89.7 bits (98), Expect = 6e-13 Identities = 75/92 (82%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 113942 TAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCGGTGGAG 114001 ||||| ||| | ||||| | ||||| | |||| ||||| |||| ||| || |||||||| Sbjct 4201966 TAGATGTTGCTGGTGTAGGCCTCAATGGACTCGTTGTTGCCCAGGATCTGTGCGGTGGAA 4202025 Query 114002 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTT 114033 |||||||||||||| |||| ||| || ||||| Sbjct 4202026 GCTGTGGGCATGGGGGCCAAGAGCAGACTGTT 4202057 Score = 82.4 bits (90), Expect = 9e-11 Identities = 114/158 (72%), Gaps = 4/158 (3%) Strand=Plus/Plus Query 114499 CTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATT--TGAACTCTTAATGGTG 114556 |||||| ||| |||||||||| || ||||| |||| ||| || | | | |||||| Sbjct 4202883 CTCATCTTTACTTGTGTACTCTACGATCTCCGTGCACAGATTGCTGGATT--TGATGGTG 4202940 Query 114557 CCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTC 114616 |||| |||| || || ||| |||| || || |||||||| |||||||||||||| Sbjct 4202941 CCCAGATTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTATGGCGTG 4203000 Query 114617 CCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGAC 114654 || || || || || || | || || || | ||| || Sbjct 4203001 CCGGTTTCGGTCTGCGATTCGATGATGGCGTACCACAC 4203038 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597275279476120