Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20aleutianus_20[genbank_20GCA_5F001910805.1_202016-12-20] 10,489 sequences; 899,650,391 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq3303 125 7e-24 seq1 98.7 1e-15 >seq3303 Length=47767 Score = 125 bits (138), Expect = 7e-24 Identities = 224/319 (70%), Gaps = 10/319 (3%) Strand=Plus/Minus Query 94994 AGGGCATTTTTCAGTTCGACCTCTGGGGTGTGAAGCCCTCGGGTCTGTACGACTGGGAAG 95053 ||||||| | |||| |||| | |||| ||||||| | | ||| |||||| ||| Sbjct 41523 AGGGCATCCTGCAGTACGACATGTGGGAGAAGAAGCCCACCGAACTGCTGGACTGG-AAG 41465 Query 95054 CT-CT--ACGCGCTGAT-GTTATCAAACACGGTGTGAAAAACGCGCTGCTTGTGGCCCCC 95109 || || | | | ||| | ||| ||||| |||| ||| ||||| ||||||| Sbjct 41464 CTGCTGAAGGAGAAGATCGCCATC---CACGGCGTGAGGAACAGCCTGCTGCTGGCCCCG 41408 Query 95110 ATGCCCACGGCCTCCACGGCGCAGATCCTTGGCAACAACGAGTCGTTCGAACCCTTCACC 95169 ||||||||||||||||| || |||||||| |||||||||||||| ||||| ||| |||| Sbjct 41407 ATGCCCACGGCCTCCACCGCCCAGATCCTGGGCAACAACGAGTCCATCGAAGCCTACACC 41348 Query 95170 TCCAACGTGTACAACAGGCGGGTGCTCGCCGGGGAATTCCCCGTCATCAACAAGCACCTC 95229 |||| | |||| | | |||| ||| |||| || || | || ||||| || || Sbjct 41347 AGCAACATCTACACCCGCAGGGTCCTCTCCGGAGAGTTTCAGATCGTCAACCCTCATCTG 41288 Query 95230 CTACGGGACCTGACGTCTCTGGGTGTGTGGGGTGACAAGGTCAAGAACCAACTGCTACGC 95289 || ||||||||| || ||||| | || || | |||||||| ||| | ||| Sbjct 41287 CTCAAAGACCTGACGGAGAGAGGGCTGTGGAGCGAGGAGATGAAGAACCAGCTGAT-CGC 41229 Query 95290 GC-CAACGGCTCCGTCCAG 95307 | |||||| ||| | ||| Sbjct 41228 TCACAACGGGTCCATTCAG 41210 Score = 84.2 bits (92), Expect = 2e-11 Identities = 132/189 (70%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 94180 TTCGCGGTCTATCTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAG 94239 ||||| | || || |||||||||||||| |||||| | ||| | || || ||| Sbjct 42322 TTCGCCATGTACCTGGAGCCCTGGCACGCCGACGTGTTTGACTTCCTGGAGCTAAAGAAG 42263 Query 94240 AACCACGGCAACGATCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGAC 94299 ||| ||| || || | |||| ||||| ||||| ||||||| || ||| | || ||| Sbjct 42262 AACACCGGAAAGGAGGAGCAGAGAGCCAGGGACCTTTTCTACGGCCTGTGGATYCCCGAC 42203 Query 94300 CTTTTTATGAAACGCGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGT 94359 || || ||||| | || |||| ||| | |||| ||| | |||||||| || || Sbjct 42202 CTGTTCATGAAGAGAGTGGAGAGCAACGAGGACTGGTCTCTGATGTGTCCCAACGAGTGC 42143 Query 94360 CCCGGACTG 94368 || || ||| Sbjct 42142 CCAGGGCTG 42134 >seq1 Length=4870262 Score = 98.7 bits (108), Expect = 1e-15 Identities = 107/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 95077 CACGGTGTGAAAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATC 95136 || ||||||| ||| ||||| |||||||||||||||| || ||||| || |||||| Sbjct 4202069 CATGGTGTGAGGAACAGTCTGCTCTTGGCCCCCATGCCCACAGCTTCCACCGCACAGATC 4202010 Query 95137 CTTGGCAACAACGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGCTC 95196 || |||||||||||||| | || ||| |||| |||| | |||| | | |||||||| Sbjct 4202009 CTGGGCAACAACGAGTCCATTGAGGCCTACACCAGCAACATCTACACCCGCAGGGTGCTC 4201950 Query 95197 GCCGGGGAATTCCCCGTCATCA 95218 | || || || | |||| || Sbjct 4201949 TCGGGAGAGTTTCAGGTCAGCA 4201928 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494658335604440